Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda04g00112 | ATGGGTGATGATTTGTACTGCTCTAGTTCCAATCTTCAGTGTGCAGAGAACACCATTTCATGTTTTGATGAATCTAATAGTAATACCACCGTTGATTTCGGGTTATCCCATTCTTTTTCTCTCAAAATCAGTCATAGTCGCAATCTAAATCAGAGTTTTTGCTTAAACGGATCCGATTCTTCGATGAGTTTTTCATTAGAGTGCGGGGAGACAATGAGGGCAATGGTGGAGAGGGAAAGTGAGCATTTTCCGAGGGGCGATTACCTCGAGAGATTGCGGAGTGGGGATTTCAGCTTAGTCGTTCGGAAAGAAGCTCTTGATTGGATCTGGAAGGTTCAAGCCTACTATAATTTCAGCGCTCTAAGTGTTTATCTCTCTATGAACTACTTGGATCGGTTCATTTCTGTACATCAGCTACCTATGGGTCAAAGTTGGATAGCGCAGTTGCTAGCTGTAGCTTGTGTATCTCTAGCAGCAAAAATGGAAGAAACTGAAGTGCCTCTGCCTGTAGATTTGCAGATTGGAGAGCCGAAATTTGTTTTTGAAGCTAAGACTATTCAAAGAATGGAACTTCTTGTTCTAAGCACCTTAAAATGGAGAATGCAGGCTGTAACTCCTTTCTCTTTCATTGACTACTTCCTCACCAAGATCAACATGGGTCGGAATCCATCCGAACTGTCCATTTCTAGAGCGATACAACTCACGCTCAACACGATCAATGGTTATATAGATTTCTTGGAATTCTGGCCATCGGAAATTGCGGCAGCTGTTGTAACTTCCATATCGGTTGAATTGGAAGGGCTAGACATGGACAAGGCAACCTCTAGCTTTGAGCATGTAGACTTGGGAAGAGTGAGGAAGTGTATTGAACTGATAGCGAGTCTTTCAATGGCGGGCTGTGGGTCTAGCAATGGAGAAAGAGGGTCGGCTGCATCGGCTTCCTCAGTTCCTCGAAGCCCGGTTGGGGTCTTAGAGGCTGCATGTTGGAGCTCAAAAAGTGACGAATCAATGGCTGATTCTTCACATAATTGTCCAAACATCAATGGCATAAGACCAAGATTATCTGACGTGGATCTTAACTCATGA | 1086 | 43.65 | MGDDLYCSSSNLQCAENTISCFDESNSNTTVDFGLSHSFSLKISHSRNLNQSFCLNGSDSSMSFSLECGETMRAMVERESEHFPRGDYLERLRSGDFSLVVRKEALDWIWKVQAYYNFSALSVYLSMNYLDRFISVHQLPMGQSWIAQLLAVACVSLAAKMEETEVPLPVDLQIGEPKFVFEAKTIQRMELLVLSTLKWRMQAVTPFSFIDYFLTKINMGRNPSELSISRAIQLTLNTINGYIDFLEFWPSEIAAAVVTSISVELEGLDMDKATSSFEHVDLGRVRKCIELIASLSMAGCGSSNGERGSAASASSVPRSPVGVLEAACWSSKSDESMADSSHNCPNINGIRPRLSDVDLNS | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2528103 | 2530023 | - | Bda018682.1 | Bda04g00112 | 5134 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda04g00112 | 361 | SMART | cyclin_7 | 107 | 195 | IPR013763 | - | |
| Bda04g00112 | 361 | MobiDBLite | consensus disorder prediction | 334 | 348 | - | - | |
| Bda04g00112 | 361 | PANTHER | CYCLINS | 1 | 348 | IPR039361 | - | |
| Bda04g00112 | 361 | PANTHER | CYCLIN-D4-1-LIKE | 1 | 348 | - | - | |
| Bda04g00112 | 361 | Pfam | Cyclin, C-terminal domain | 204 | 296 | IPR004367 | - | |
| Bda04g00112 | 361 | SUPERFAMILY | Cyclin-like | 186 | 297 | IPR036915 | - | |
| Bda04g00112 | 361 | SUPERFAMILY | Cyclin-like | 64 | 201 | IPR036915 | - | |
| Bda04g00112 | 361 | SMART | Cyclin_C_2 | 204 | 332 | IPR004367 | - | |
| Bda04g00112 | 361 | Pfam | Cyclin, N-terminal domain | 72 | 201 | IPR006671 | - | |
| Bda04g00112 | 361 | ProSitePatterns | Cyclins signature. | 102 | 133 | IPR006671 | - | |
| Bda04g00112 | 361 | CDD | CYCLIN | 102 | 194 | IPR013763 | - | |
| Bda04g00112 | 361 | Gene3D | - | 85 | 202 | - | - | |
| Bda04g00112 | 361 | MobiDBLite | consensus disorder prediction | 334 | 361 | - | - | |
| Bda04g00112 | 361 | Gene3D | - | 73 | 291 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda04g00112 | Bda-Chr4:2528103 | Bda14g01328 | Bda-Chr14:14972172 | 1.12E-90 | dispersed | |
| Bda13g00640 | Bda-Chr13:7373701 | Bda04g00112 | Bda-Chr4:2528103 | 3.84E-38 | dispersed | |
| Bda14g00724 | Bda-Chr14:5470658 | Bda04g00112 | Bda-Chr4:2528103 | 1.78E-39 | dispersed | |
| Bda13g01369 | Bda-Chr13:36271879 | Bda04g00112 | Bda-Chr4:2528103 | 7.99E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda04g00112 | K18810 | - | jre:108991232 | 375.17 |