Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00117 AGATCATATGATATCATTCGTGGCAATCCTTCAACAGCCAAGTTCATTCCAGCAGTTGCTGTCCTTCTATTTGCAATATGGGGTATTGGGCCACTGTTACGCCAAAGCAGAAACCTACTTTTTCATAGGAATGATAATAATTGGAAGAAAAGTGGAACGTATTATGTAATGACCTCTTATCTTCAGCCTCTGCTGCTCTGGGTTGGAGCAACACTTGTTTGCAGAGCATTGGAACCAATTATTTTACCTACAGCCGTTAGCCAAGTTATTAAGCAGAGACTTTTGAACTTTGTCAGGTCACTGTCAACGGTCATGGCTTTTGCTTATTGTTTATCAAGTTTGATTCAACAAGCACAAAACTTCTTTATGGAGACTAATGAATCAAGTGATACACGAAATATGGGTTTCCAATTTGCGGGGAAAGCAGTATATACAGCAGTTTGGGTTGCTGCTGTTTCATTATTCATGGAGTTGTTGGGGTTTTCTACCCAAAAATGGCTTACGGCTGGAGGTCTTGGGACAGTATTGCTAACCCTTGCTGGTCGTGAGATATTTACAAATTTCCTTTCAAGTGCAATGATTCATGCAACCCGGCCTTTTGTTGTCAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTGGTACTGTTGAGCATGTGGGTTGGTGGTCACCCACAATTGTCAGAGGTGAAGATCGCGAAGCAGTTCACATTCCAAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTTAGTCAAAAAACTCATTGGCGTATTAAAACTCACCTTGCCATTAGTCATTTGGACGTTAATAAGATCAATAATATTGTTGCTGATATGCGCAAGGTATTAGCCAAGAATCCTCAAGTTGAACACAAAAGATTACATAGAAGAGTATTTTTAGAAAACGTCAATCCTGAAAATCAGGCTCTATTGATTTTGATATCGTGTTTTGTGAAGACATCGCATTTTGAGGAATATCTCTGTGTTAAGGAAGCCATACTATTGGATCTGCTTAGAGTCATCAGCCATCACCGAGCTAGACTAGCCACACCAATCCGTACAGTTCAGAAAATATACAGCGAAACAGAATGGGAAAGCATACCGTATGCAGATTCCAGATTTAATCGTGGTGGAGTGGCATCCAACCGTCCATTGCTCATGATCGAACCCCCATACAGAATCAATGGGGAAGATAAAATGCGAAATCAAAACCGTCCAGTGCGCACAACATCCGATGCCAACGTAGAGAAGGCAAAAGAAGCACCTCAGTCTGATGACAAGGGAGATATCAAAAACAGGGACTCTCCAGATTCCACTTCCAAGGAGGATTCAAAAGTTGGAGCTGAAACAAGGCCAGACACTTTGTCTGATCAGGCGACAGTAAAATCAGTATCGGCAAAGCATATCTCCAAAACAGATTCTAAGGCTCAAGAAATGGGTGTCTCTGATGTCAAAGCGACTGAAAATTCAGCGAAGAAGGCCACGGATGTAGGAAAGAATAGACCAACTATCAAGTCGGACACTGCAGCCATTCCTTCGTCAGAAACTAATATTGGAAATCCAGCAAAATTGGATGTTGACAAACTACGGGTTGCTCAGGCACCATCGTCGATGCCTGCATTGGAAGAGAACATAGTTCTGGGCGTCGCTTTGGAAGGGTCGAAGAGAACACTTCCGATCGAGGAAGAAGATATGGCTTCAACTCCAGCAGAGGCTAAGGAATTGGCATCTTGTCTGAATGGAAATGGGCATACAGCTTCTGAGAAAGATAAGAAAGAAGATCAAACAAAAGCTTCTTCTTCAGCTGGTGATTGA 1824 41.83 RSYDIIRGNPSTAKFIPAVAVLLFAIWGIGPLLRQSRNLLFHRNDNNWKKSGTYYVMTSYLQPLLLWVGATLVCRALEPIILPTAVSQVIKQRLLNFVRSLSTVMAFAYCLSSLIQQAQNFFMETNESSDTRNMGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEHKRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSETEWESIPYADSRFNRGGVASNRPLLMIEPPYRINGEDKMRNQNRPVRTTSDANVEKAKEAPQSDDKGDIKNRDSPDSTSKEDSKVGAETRPDTLSDQATVKSVSAKHISKTDSKAQEMGVSDVKATENSAKKATDVGKNRPTIKSDTAAIPSSETNIGNPAKLDVDKLRVAQAPSSMPALEENIVLGVALEGSKRTLPIEEEDMASTPAEAKELASCLNGNGHTASEKDKKEDQTKASSSAGD 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2654404 2659807 - Bda018675.1 Bda04g00117 5139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00117 607 MobiDBLite consensus disorder prediction 454 470 - -
Bda04g00117 607 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 603 IPR045042 -
Bda04g00117 607 MobiDBLite consensus disorder prediction 396 524 - -
Bda04g00117 607 SUPERFAMILY Sm-like ribonucleoproteins 184 254 IPR010920 -
Bda04g00117 607 MobiDBLite consensus disorder prediction 509 523 - -
Bda04g00117 607 Gene3D - 96 198 - -
Bda04g00117 607 Gene3D - 200 255 IPR023408 -
Bda04g00117 607 MobiDBLite consensus disorder prediction 566 607 - -
Bda04g00117 607 Pfam Mechanosensitive ion channel 141 348 IPR006685 GO:0016020|GO:0055085
Bda04g00117 607 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 603 - -
Bda04g00117 607 MobiDBLite consensus disorder prediction 415 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00117 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - qsu:112018097 826.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00910 Bda-Chr1:42107916 Bda04g00117 Bda-Chr4:2654404 0 dispersed
Bda11g00254 Bda-Chr11:2971275 Bda04g00117 Bda-Chr4:2654404 9.11E-12 transposed
Bda13g01360 Bda-Chr13:36001522 Bda04g00117 Bda-Chr4:2654404 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00254 . 1 535 Mechanosensitive Ion Channel Family AT4G00290 54.9 1.0e-149 526.9
Bda04g00117 . 1 605 Mechanosensitive Ion Channel Family AT5G10490 63.3 7.8e-201 697.2
Bda01g00910 . 16 621 Mechanosensitive Ion Channel Family AT5G10490 54.2 1.3e-174 610.1
Bda13g01360 . 247 763 Mechanosensitive Ion Channel Family AT5G10490 61.4 1.1e-167 587.0
Bda01g00910 . 1 617 Mechanosensitive Ion Channel Family AT1G58200 55.3 6.3e-182 634.4
Bda04g00117 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 59.0 4.4e-175 611.7
Bda13g01360 . 247 746 Mechanosensitive Ion Channel Family AT1G58200 59.9 4.5e-156 548.5
Bda06g00468 . 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.9 1.7e-248 855.9
Bda14g00631 . 1 821 Mechanosensitive Ion Channel Family AT1G53470 55.4 8.3e-243 837.0
Bda06g00468 . 63 925 Mechanosensitive Ion Channel Family AT3G14810 53.2 1.9e-236 815.8
Bda14g00631 . 2 827 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-226 781.9
Bda06g00468 . 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.2e-280 961.8
Bda14g00631 . 10 826 Mechanosensitive Ion Channel Family AT1G78610 57.5 5.6e-260 894.0
Bda06g00468 . 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.9 5.7e-225 777.7
Bda14g00631 . 142 820 Mechanosensitive Ion Channel Family AT2G17000 58.5 8.2e-224 773.9
Bda14g00631 . 116 566 Mechanosensitive Ion Channel Family AT2G17010 60.8 1.0e-144 510.8
Bda03g00130 . 55 776 Mechanosensitive Ion Channel Family AT5G19520 51.4 2.3e-193 672.5
Bda03g00130 . 61 776 Mechanosensitive Ion Channel Family AT5G12080 56.0 1.0e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00117 Bda_Chr04 FPKM 6.821395 5.860015 5.734279 6.821848 7.197304 5.890672 5.797996 8.158071 7.980712