Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00117 AGATCATATGATATCATTCGTGGCAATCCTTCAACAGCCAAGTTCATTCCAGCAGTTGCTGTCCTTCTATTTGCAATATGGGGTATTGGGCCACTGTTACGCCAAAGCAGAAACCTACTTTTTCATAGGAATGATAATAATTGGAAGAAAAGTGGAACGTATTATGTAATGACCTCTTATCTTCAGCCTCTGCTGCTCTGGGTTGGAGCAACACTTGTTTGCAGAGCATTGGAACCAATTATTTTACCTACAGCCGTTAGCCAAGTTATTAAGCAGAGACTTTTGAACTTTGTCAGGTCACTGTCAACGGTCATGGCTTTTGCTTATTGTTTATCAAGTTTGATTCAACAAGCACAAAACTTCTTTATGGAGACTAATGAATCAAGTGATACACGAAATATGGGTTTCCAATTTGCGGGGAAAGCAGTATATACAGCAGTTTGGGTTGCTGCTGTTTCATTATTCATGGAGTTGTTGGGGTTTTCTACCCAAAAATGGCTTACGGCTGGAGGTCTTGGGACAGTATTGCTAACCCTTGCTGGTCGTGAGATATTTACAAATTTCCTTTCAAGTGCAATGATTCATGCAACCCGGCCTTTTGTTGTCAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTGGTACTGTTGAGCATGTGGGTTGGTGGTCACCCACAATTGTCAGAGGTGAAGATCGCGAAGCAGTTCACATTCCAAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTTAGTCAAAAAACTCATTGGCGTATTAAAACTCACCTTGCCATTAGTCATTTGGACGTTAATAAGATCAATAATATTGTTGCTGATATGCGCAAGGTATTAGCCAAGAATCCTCAAGTTGAACACAAAAGATTACATAGAAGAGTATTTTTAGAAAACGTCAATCCTGAAAATCAGGCTCTATTGATTTTGATATCGTGTTTTGTGAAGACATCGCATTTTGAGGAATATCTCTGTGTTAAGGAAGCCATACTATTGGATCTGCTTAGAGTCATCAGCCATCACCGAGCTAGACTAGCCACACCAATCCGTACAGTTCAGAAAATATACAGCGAAACAGAATGGGAAAGCATACCGTATGCAGATTCCAGATTTAATCGTGGTGGAGTGGCATCCAACCGTCCATTGCTCATGATCGAACCCCCATACAGAATCAATGGGGAAGATAAAATGCGAAATCAAAACCGTCCAGTGCGCACAACATCCGATGCCAACGTAGAGAAGGCAAAAGAAGCACCTCAGTCTGATGACAAGGGAGATATCAAAAACAGGGACTCTCCAGATTCCACTTCCAAGGAGGATTCAAAAGTTGGAGCTGAAACAAGGCCAGACACTTTGTCTGATCAGGCGACAGTAAAATCAGTATCGGCAAAGCATATCTCCAAAACAGATTCTAAGGCTCAAGAAATGGGTGTCTCTGATGTCAAAGCGACTGAAAATTCAGCGAAGAAGGCCACGGATGTAGGAAAGAATAGACCAACTATCAAGTCGGACACTGCAGCCATTCCTTCGTCAGAAACTAATATTGGAAATCCAGCAAAATTGGATGTTGACAAACTACGGGTTGCTCAGGCACCATCGTCGATGCCTGCATTGGAAGAGAACATAGTTCTGGGCGTCGCTTTGGAAGGGTCGAAGAGAACACTTCCGATCGAGGAAGAAGATATGGCTTCAACTCCAGCAGAGGCTAAGGAATTGGCATCTTGTCTGAATGGAAATGGGCATACAGCTTCTGAGAAAGATAAGAAAGAAGATCAAACAAAAGCTTCTTCTTCAGCTGGTGATTGA 1824 41.83 RSYDIIRGNPSTAKFIPAVAVLLFAIWGIGPLLRQSRNLLFHRNDNNWKKSGTYYVMTSYLQPLLLWVGATLVCRALEPIILPTAVSQVIKQRLLNFVRSLSTVMAFAYCLSSLIQQAQNFFMETNESSDTRNMGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEHKRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSETEWESIPYADSRFNRGGVASNRPLLMIEPPYRINGEDKMRNQNRPVRTTSDANVEKAKEAPQSDDKGDIKNRDSPDSTSKEDSKVGAETRPDTLSDQATVKSVSAKHISKTDSKAQEMGVSDVKATENSAKKATDVGKNRPTIKSDTAAIPSSETNIGNPAKLDVDKLRVAQAPSSMPALEENIVLGVALEGSKRTLPIEEEDMASTPAEAKELASCLNGNGHTASEKDKKEDQTKASSSAGD 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2654404 2659807 - Bda018675.1 Bda04g00117 5139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00117 607 MobiDBLite consensus disorder prediction 454 470 - -
Bda04g00117 607 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 603 IPR045042 -
Bda04g00117 607 MobiDBLite consensus disorder prediction 396 524 - -
Bda04g00117 607 SUPERFAMILY Sm-like ribonucleoproteins 184 254 IPR010920 -
Bda04g00117 607 MobiDBLite consensus disorder prediction 509 523 - -
Bda04g00117 607 Gene3D - 96 198 - -
Bda04g00117 607 Gene3D - 200 255 IPR023408 -
Bda04g00117 607 MobiDBLite consensus disorder prediction 566 607 - -
Bda04g00117 607 Pfam Mechanosensitive ion channel 141 348 IPR006685 GO:0016020|GO:0055085
Bda04g00117 607 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 603 - -
Bda04g00117 607 MobiDBLite consensus disorder prediction 415 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00910 Bda-Chr1:42107916 Bda04g00117 Bda-Chr4:2654404 0 dispersed
Bda11g00254 Bda-Chr11:2971275 Bda04g00117 Bda-Chr4:2654404 9.11E-12 transposed
Bda13g01360 Bda-Chr13:36001522 Bda04g00117 Bda-Chr4:2654404 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00117 K22047 - qsu:112018097 826.624