Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00124 | ATGGAGTTTGACGACCAAGAGGAGCATGACGAAGAGATGGCGAGCTTCGACTCGCTCGGAAACTCGGGGTCGAGGGTGAAAATGGCGAACTTGGAAGCTACGAGTCCGCAGAGTAGGAAGCCGAGGTACAGAGAGTGTTTGAAGAATCACGCCGTCGGCATCGGTGGCCATGCCCTCGATGGCTGCGGTGAGTTTATGCCGGCCGGAGCAGAAGGAACGCTGGATGGGCTCAAATGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGGAAAGAGACTGACGCGGGATTAGCAGTCGGAGACCATTTCCTTCTCCCTCAACACCCCCACCCGCAGTTCTCACCTTACTACCGAACTCCAGCGGGGTACCTCCACGTGGCACATCACCAGAGGCCGCTGGCCCTTCCATCGACGTCAGGCGGTGGAGGAAGCCATAGCCGGGAAGATCAGGAGGACATTTCTAACCCAAACGGCGGCCATGGAGGCAGCGGAAGCGGAGCTTTTGGGAAGAAAAGATTCAGAACGAAGTTCAGTCAAGATCAGAAAGAGAGAATGCTGGGTTTAGCAGAAAGACTCGGATGGAGGATTCAGAAACACGACGACGCCATCGTTCAGCAGTTCTGCAACGAAACAGGGGTTAAACGACAGGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTCGGAAAAAAACCCTAA | 702 | 54.84 | MEFDDQEEHDEEMASFDSLGNSGSRVKMANLEATSPQSRKPRYRECLKNHAVGIGGHALDGCGEFMPAGAEGTLDGLKCAACNCHRNFHRKETDAGLAVGDHFLLPQHPHPQFSPYYRTPAGYLHVAHHQRPLALPSTSGGGGSHSREDQEDISNPNGGHGGSGSGAFGKKRFRTKFSQDQKERMLGLAERLGWRIQKHDDAIVQQFCNETGVKRQVLKVWMHNNKHTLGKKP | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2892638 | 2893339 | + | Bda018666.1 | Bda04g00124 | 5146 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00124 | 233 | Gene3D | - | 156 | 231 | - | - | |
Bda04g00124 | 233 | SUPERFAMILY | Homeodomain-like | 157 | 231 | IPR009057 | - | |
Bda04g00124 | 233 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Bda04g00124 | 233 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 43 | 92 | IPR006456 | - | |
Bda04g00124 | 233 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 42 | 92 | IPR006456 | - | |
Bda04g00124 | 233 | MobiDBLite | consensus disorder prediction | 17 | 37 | - | - | |
Bda04g00124 | 233 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 170 | 226 | IPR006455 | - | |
Bda04g00124 | 233 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 26 | 232 | - | - | |
Bda04g00124 | 233 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 26 | 232 | - | - | |
Bda04g00124 | 233 | MobiDBLite | consensus disorder prediction | 133 | 170 | - | - | |
Bda04g00124 | 233 | Pfam | ZF-HD protein dimerisation region | 42 | 93 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00124 | Bda-Chr4:2892638 | Bda11g01865 | Bda-Chr11:53736302 | 9.08E-60 | dispersed | |
Bda04g00110 | Bda-Chr4:2477341 | Bda04g00124 | Bda-Chr4:2892638 | 2.39E-178 | transposed | |
Bda11g00787 | Bda-Chr11:7860916 | Bda04g00124 | Bda-Chr4:2892638 | 1.34E-84 | transposed | |
Bda01g01497 | Bda-Chr1:50842309 | Bda04g00124 | Bda-Chr4:2892638 | 3.24E-55 | wgd | |
Bda11g01565 | Bda-Chr11:48719810 | Bda04g00124 | Bda-Chr4:2892638 | 3.50E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15785 | PF04770 | ZF-HD_dimer | 3.20E-29 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00124 | - | - | csv:101204784 | 363.229 |