Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00124 ATGGAGTTTGACGACCAAGAGGAGCATGACGAAGAGATGGCGAGCTTCGACTCGCTCGGAAACTCGGGGTCGAGGGTGAAAATGGCGAACTTGGAAGCTACGAGTCCGCAGAGTAGGAAGCCGAGGTACAGAGAGTGTTTGAAGAATCACGCCGTCGGCATCGGTGGCCATGCCCTCGATGGCTGCGGTGAGTTTATGCCGGCCGGAGCAGAAGGAACGCTGGATGGGCTCAAATGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGGAAAGAGACTGACGCGGGATTAGCAGTCGGAGACCATTTCCTTCTCCCTCAACACCCCCACCCGCAGTTCTCACCTTACTACCGAACTCCAGCGGGGTACCTCCACGTGGCACATCACCAGAGGCCGCTGGCCCTTCCATCGACGTCAGGCGGTGGAGGAAGCCATAGCCGGGAAGATCAGGAGGACATTTCTAACCCAAACGGCGGCCATGGAGGCAGCGGAAGCGGAGCTTTTGGGAAGAAAAGATTCAGAACGAAGTTCAGTCAAGATCAGAAAGAGAGAATGCTGGGTTTAGCAGAAAGACTCGGATGGAGGATTCAGAAACACGACGACGCCATCGTTCAGCAGTTCTGCAACGAAACAGGGGTTAAACGACAGGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTCGGAAAAAAACCCTAA 702 54.84 MEFDDQEEHDEEMASFDSLGNSGSRVKMANLEATSPQSRKPRYRECLKNHAVGIGGHALDGCGEFMPAGAEGTLDGLKCAACNCHRNFHRKETDAGLAVGDHFLLPQHPHPQFSPYYRTPAGYLHVAHHQRPLALPSTSGGGGSHSREDQEDISNPNGGHGGSGSGAFGKKRFRTKFSQDQKERMLGLAERLGWRIQKHDDAIVQQFCNETGVKRQVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2892638 2893339 + Bda018666.1 Bda04g00124 5146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00124 233 Gene3D - 156 231 - -
Bda04g00124 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Bda04g00124 233 MobiDBLite consensus disorder prediction 1 41 - -
Bda04g00124 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Bda04g00124 233 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 42 92 IPR006456 -
Bda04g00124 233 MobiDBLite consensus disorder prediction 17 37 - -
Bda04g00124 233 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 170 226 IPR006455 -
Bda04g00124 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 26 232 - -
Bda04g00124 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 232 - -
Bda04g00124 233 MobiDBLite consensus disorder prediction 133 170 - -
Bda04g00124 233 Pfam ZF-HD protein dimerisation region 42 93 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00124 - - - csv:101204784 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00124 Bda-Chr4:2892638 Bda11g01865 Bda-Chr11:53736302 9.08E-60 dispersed
Bda04g00110 Bda-Chr4:2477341 Bda04g00124 Bda-Chr4:2892638 2.39E-178 transposed
Bda11g00787 Bda-Chr11:7860916 Bda04g00124 Bda-Chr4:2892638 1.34E-84 transposed
Bda01g01497 Bda-Chr1:50842309 Bda04g00124 Bda-Chr4:2892638 3.24E-55 wgd
Bda11g01565 Bda-Chr11:48719810 Bda04g00124 Bda-Chr4:2892638 3.50E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15785 PF04770 ZF-HD_dimer 3.20E-29 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00124 Bda_Chr04 FPKM 25.652779 25.458952 28.747118 32.48027 33.735756 24.426779 33.001953 39.108711 40.995872