Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00124 ATGGAGTTTGACGACCAAGAGGAGCATGACGAAGAGATGGCGAGCTTCGACTCGCTCGGAAACTCGGGGTCGAGGGTGAAAATGGCGAACTTGGAAGCTACGAGTCCGCAGAGTAGGAAGCCGAGGTACAGAGAGTGTTTGAAGAATCACGCCGTCGGCATCGGTGGCCATGCCCTCGATGGCTGCGGTGAGTTTATGCCGGCCGGAGCAGAAGGAACGCTGGATGGGCTCAAATGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGGAAAGAGACTGACGCGGGATTAGCAGTCGGAGACCATTTCCTTCTCCCTCAACACCCCCACCCGCAGTTCTCACCTTACTACCGAACTCCAGCGGGGTACCTCCACGTGGCACATCACCAGAGGCCGCTGGCCCTTCCATCGACGTCAGGCGGTGGAGGAAGCCATAGCCGGGAAGATCAGGAGGACATTTCTAACCCAAACGGCGGCCATGGAGGCAGCGGAAGCGGAGCTTTTGGGAAGAAAAGATTCAGAACGAAGTTCAGTCAAGATCAGAAAGAGAGAATGCTGGGTTTAGCAGAAAGACTCGGATGGAGGATTCAGAAACACGACGACGCCATCGTTCAGCAGTTCTGCAACGAAACAGGGGTTAAACGACAGGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTCGGAAAAAAACCCTAA 702 54.84 MEFDDQEEHDEEMASFDSLGNSGSRVKMANLEATSPQSRKPRYRECLKNHAVGIGGHALDGCGEFMPAGAEGTLDGLKCAACNCHRNFHRKETDAGLAVGDHFLLPQHPHPQFSPYYRTPAGYLHVAHHQRPLALPSTSGGGGSHSREDQEDISNPNGGHGGSGSGAFGKKRFRTKFSQDQKERMLGLAERLGWRIQKHDDAIVQQFCNETGVKRQVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2892638 2893339 + Bda018666.1 Bda04g00124 5146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00124 233 Gene3D - 156 231 - -
Bda04g00124 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Bda04g00124 233 MobiDBLite consensus disorder prediction 1 41 - -
Bda04g00124 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Bda04g00124 233 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 42 92 IPR006456 -
Bda04g00124 233 MobiDBLite consensus disorder prediction 17 37 - -
Bda04g00124 233 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 170 226 IPR006455 -
Bda04g00124 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 26 232 - -
Bda04g00124 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 232 - -
Bda04g00124 233 MobiDBLite consensus disorder prediction 133 170 - -
Bda04g00124 233 Pfam ZF-HD protein dimerisation region 42 93 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00124 Bda-Chr4:2892638 Bda11g01865 Bda-Chr11:53736302 9.08E-60 dispersed
Bda04g00110 Bda-Chr4:2477341 Bda04g00124 Bda-Chr4:2892638 2.39E-178 transposed
Bda11g00787 Bda-Chr11:7860916 Bda04g00124 Bda-Chr4:2892638 1.34E-84 transposed
Bda01g01497 Bda-Chr1:50842309 Bda04g00124 Bda-Chr4:2892638 3.24E-55 wgd
Bda11g01565 Bda-Chr11:48719810 Bda04g00124 Bda-Chr4:2892638 3.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15785 PF04770 ZF-HD_dimer 3.20E-29 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00124 - - csv:101204784 363.229