Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00147 ATGGCGGAATCTGAAAGGCCAGCAAAGCAGCTCAAATCTAACAGCTGGAAACCATCCAAGCCTGACTCTTCTTCCTCTTCCTCTCAAATCGTCTCCTTTGGGAATTCAAATTCTTCTCAGAAATCTTCTGGTTTGCACTCTACTTTAAAGCCTAAGATTGAGATGAACATGACTTCTTCTCTCGTCGGCCATGGATCTAGTGAGAATCTTCCGAGCCTGATGCAAAATGAAGGAACCAAGAGGTCTTTTGGCGCAGTAAGTAGAAGCCATTTGCTTGCCCAAGATCATGTTTTAGCTGAGAGAAAGAGGAGAGAGAAACTCAGCCAGAGGTTCATCGCTCTCTCTGCTCTTATTCCTGGCCTGAAAAAGATGGATAAGGCTTCTGTTCTTGGAGACGCCATTAAACATGTGAAGCAGTTGCAAGAACGTCTGAGGGAGCTTGAAGAACAAGCAACGAAGAAGACGATGGAGTCAGTGGTTTTGATGAAGAAAGCTCATCTTTTAACTGACAACGGTTCTTCTTCTGATGAAAATTCCAATGGCTTTTCCGACCAACACCTGCCGGAAATCGAAGCAAGAGTCTCCGGCAAGGACGTTCTCATTCGAATTCACTGCGGAAAACACGAGGGTCTGTTAACTAAAGTACTGAACGAAGTAGAGAAGCTTCATCTATCAATAGTTCATAGCAGTGCACTGAAATTTGGAGATTCCACTCTTGATATCACGATTATTGCCAAGATGGAAGACGACTTCTGCATGACAGTTAAGGAAATGGCGAAGACGCTGAGAAAAGCTGTGCTTAACTTCATTTCCGACATAATCTGA 825 43.88 MAESERPAKQLKSNSWKPSKPDSSSSSSQIVSFGNSNSSQKSSGLHSTLKPKIEMNMTSSLVGHGSSENLPSLMQNEGTKRSFGAVSRSHLLAQDHVLAERKRREKLSQRFIALSALIPGLKKMDKASVLGDAIKHVKQLQERLRELEEQATKKTMESVVLMKKAHLLTDNGSSSDENSNGFSDQHLPEIEARVSGKDVLIRIHCGKHEGLLTKVLNEVEKLHLSIVHSSALKFGDSTLDITIIAKMEDDFCMTVKEMAKTLRKAVLNFISDII 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4033405 4034520 + Bda018631.3 Bda04g00147 5169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00147 274 CDD bHLH_AtNAI1_like 92 164 - -
Bda04g00147 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 162 IPR036638 GO:0046983
Bda04g00147 274 MobiDBLite consensus disorder prediction 1 46 - -
Bda04g00147 274 PANTHER BHLH TRANSCRIPTION FACTOR 4 269 - -
Bda04g00147 274 MobiDBLite consensus disorder prediction 8 46 - -
Bda04g00147 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Bda04g00147 274 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 4 269 - -
Bda04g00147 274 Pfam Helix-loop-helix DNA-binding domain 96 141 IPR011598 GO:0046983
Bda04g00147 274 Gene3D - 86 156 IPR036638 GO:0046983
Bda04g00147 274 Coils Coil 130 157 - -
Bda04g00147 274 SMART finulus 97 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00147 Bda-Chr4:4033405 Bda07g00099 Bda-Chr7:1167675 1.96E-20 dispersed
Bda03g00446 Bda-Chr3:3823985 Bda04g00147 Bda-Chr4:4033405 1.70E-16 transposed
Bda01g01894 Bda-Chr1:55110866 Bda04g00147 Bda-Chr4:4033405 1.12E-09 transposed
Bda10g00030 Bda-Chr10:598516 Bda04g00147 Bda-Chr4:4033405 2.85E-149 wgd
Bda11g01542 Bda-Chr11:47840500 Bda04g00147 Bda-Chr4:4033405 7.39E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15790 PF00010 HLH 2.50E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00147 - - rcu:8288727 245.743