Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00171 ATGGTTCTCATAGCTTATCTTTCTCGTCTCTCTACGTCATTGCCGCCTTCCTTCGGAAATTTCTTTCACAGACTGGAGCAAATGTGCCATTTCGCTCTTTCTGCTGTTATCGGAAGCATCCTCTCTGCCATTCTCACCTTCTTCTTTGCTTTAGTGGGCACCTTGTTAGGGGCGATGACTGGTGCAGTGATAGGGCAAGAAACCGAGAGTGGTTTTGTGCGTGGGGCTGCGGTGGGAGCAATATCAGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCATCCCTAGTTATCTGGAAATCGGATGAATCCAGAATAGGCTGCGTTCTTTACCTGATTGATGTCATTGTGAGCCTCCTTAGTGGAAGACTAGTTCGAGAAAGGATTGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAGATGGGTGCAATTGAGAGCTTTGAAGATGTCTCAAACATTTTTGACACGAGCAGTGGAAAAGGACTGCCAGGAGACTCTGTTGAAAAAATTCCAAAACTCATAATTTCTTTCACCAACAACGTGGATGCTTCCTGTTCAGTTTGCCTTCAGGATTTTCAGCTGGGAGAGACAGTAAGAAGCTTACCTCAATGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTTCTAAGACATGGCTCCTGCCCACTATGCAGAAGGGATCTTTGA 690 45.51 MVLIAYLSRLSTSLPPSFGNFFHRLEQMCHFALSAVIGSILSAILTFFFALVGTLLGAMTGAVIGQETESGFVRGAAVGAISGAVFSIEVFESSLVIWKSDESRIGCVLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAIESFEDVSNIFDTSSGKGLPGDSVEKIPKLIISFTNNVDASCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLLRHGSCPLCRRDL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5101650 5103334 - Bda018595.1 Bda04g00171 5193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00171 229 CDD RING-H2_PA-TM-RING 184 226 - -
Bda04g00171 229 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 229 IPR044523 -
Bda04g00171 229 SUPERFAMILY RING/U-box 174 229 - -
Bda04g00171 229 Pfam Ring finger domain 183 226 IPR001841 -
Bda04g00171 229 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Bda04g00171 229 PANTHER NEP1-INTERACTING PROTEIN 1 13 229 - -
Bda04g00171 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 229 IPR013083 -
Bda04g00171 229 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Bda04g00171 229 SMART ring_2 184 225 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00171 Bda-Chr4:5101650 Bda14g00977 Bda-Chr14:7903613 1.89E-124 dispersed
Bda04g00171 Bda-Chr4:5101650 Bda11g00985 Bda-Chr11:9555561 6.30E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00171 - - fve:101312761 375.17