Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00194 ATGGAGACTCTCCATTACCCAATCTCCCTGTCCAAATCCAAGTCGCTGTTGCATTGTATACAAAACAGACGAATCAAGTCGCTGAGAGGTGTAACTCTTTGCTCTCTACGGTTTTCTACTAGGGGTAACGAGCCCTTCCCAGCTTTTCCTTCTACTGCTTCAAATTTTAGTAATATCCGTTTTGGGCGTTTTCATTGCGTCTCCGAGTCCGCTGATCGTTACCATGATGACCATCACCACCATCATCACCAGTGCCACCACAACCACCACCATTGCAATGATGATACGGAGCTGACAGGACCTCAAAAGGCGTTGATTAGCTTCGCCAAAGCCACTAAGTGGATAGACTTGGCCAATTATCTGAGAGAGCATCTACAACTGTGTTGTGCTTCCACTGCTTTGTTTGTTGCTGCTGCCGCTTGTCCTTACTTAGTGCCCAAGCACGCAGTGAAGCCTCTGCAGAATGCGTTCATAATCTCAGCTTTCCCTCTAGTTGGGGTGTCTGCATCTTTTGATGCTCTTACTGATATCTGTGGTGGGAAAGTAAACATTCATGTTCTGATGGCACTTGCTGCCTTTGCATCAATATTTATGGGGAACTCTATAGAAGGAGGACTACTTCTTGCCATGTTTAATCTAGCTCATATTGCTGAAGAGTATTTCACGAGCCGATCAATGGTTGATGTTAAAGAGTTGAAAGAAAATTATCCTGAATATGCGCTAGTCCTGGACATTAATGATGACCAGCTTCCTAATACTTCAGAGTTGGCATATAAAAGGGTGCAAGTGCATGATGTAGAAGTTGGCTCATATATCTTGATTCTTGCTGGGGAGTCTGTGCCTGTAGATTGTGAAGTTTACCAAGGTAGTGCCACAATTACCGTTGAGCACTTAACAGGAGAAGTCAAACCTCTAGAGATAAATGTCGGAGATCGGGTACCCGGTGGTGCAAGAAATTTGGATGGAAGAATAGTAGTGAAGGTGATAAAAACTTGGAAAGAATCTACTCTGAACAAGATAGTGCAGCTAACTGAAGAAGCACAGATGAATAAGCCAAAGCTTCAAAGGTGGCTCGATGAATTTGGTGAACAGTACAGCAAGGTTGTTGTTGTTTTGTCTGTTGCAATTGCCATCATTGGGCCATTGTTATTCAAGTGGCCCTTTATTTGTACACCAGCTTGCAGAGGATCAATCTATAGAGCACTCGGCCTTATGGTGGCAGCATCACCATGTGCCCTGGCCGTTGCTCCATTGGCATACGCTACTGCAATTAGTTCCTGTGCCAAAAAGGGAATACTACTTAAAGGTGGGCATGTGCTAGATGCATTGGCTTCTTGCCAGACAATCGCATTTGATAAAACTGGGACACTGACTACTGGCGGGCTTGTGTTTAAAGCAATTGAACCAATCTATGGACATAGGGTCATACAAAACAAATCAGATTTTTCTTCTTGTTGCATTCCTAGCTGTGAAAAAGAAGCGCTTGCTGTGGCAGCGGCAATGGAGAAGGGTACTACTCATCCAATTGGAAGAGCCGTGGTTGACCATAGTGTGGGAAAAGATCTTCCTCCAATATCTGTTGAAAGTTTCGAGTATTTTCCGGGTAAAGGTCTGGTAGCAACTCTGCATGGCATCAAGTCAGGAACTGGTATGGGAAAACTGTTGACAGCATCCCTTGGTTCTGTTGATTTCATTACTTCACTTTGTAAATCTAAAACAGAGTCGAGAAAGGTTCAGGAAGCTGTGAATGCATCGTCTTATGGAAGAGAATTTGTTTGTGCTGCTCTTTTAGTGGATGAAAAGATAACACTGATTCACCTTGAAGATCGACCTCGACCTGGAGTATTAGATGTCATAGTTGACTTGCAAGATCATGCAAAACTCCGCGTAATGATGCTAACAGGAGATCATGAGTCAAGTGCACGAAGAGTTGCCAATGCAGTGGGCATCAAGGAAGTTTATTGTGGTCTGAAACCTGAAGATAAGCTTAGTTATGTGAAGGATATCTCAAGGGAGACAGGTGGAGGTTTGATAATGGTTGGCGAAGGCATTAACGATGCACCAGCTCTTGCTGCAGCCTCAGTTGGAATAGTGCTTGCTCAACGTGCTAGTGCAACTGCCGTAGCGGTTGCAGATGTTCTTCTACTGCGAGACAACATCCTTGGTGTGCCATTTTCCATTGCCAAGTCACGCCAAACAACTTCCCTGGTTAAACAGAACGTTGCCCTTGCATTAACATCTATTTTTTTGGCTTCCCTTCCATCTGTGCTAGGGTTTTTGCCCTTATGGTTAACGGTTCTTTTACATGAAGGTGGTACGCTTATGGTTTGCCTTAACTCAATACGTGCTCTTAATAACCCAACTTGGTCATGGAGGCAAGACTTGCTACATCTTTTTAATGACTTCAGTTCCAAAATTGCAGCATTGACTCCTAAACCCAGTTCTAGCTACACTGAAGCTGCCCAATTGTAA 2472 43.97 METLHYPISLSKSKSLLHCIQNRRIKSLRGVTLCSLRFSTRGNEPFPAFPSTASNFSNIRFGRFHCVSESADRYHDDHHHHHHQCHHNHHHCNDDTELTGPQKALISFAKATKWIDLANYLREHLQLCCASTALFVAAAACPYLVPKHAVKPLQNAFIISAFPLVGVSASFDALTDICGGKVNIHVLMALAAFASIFMGNSIEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENYPEYALVLDINDDQLPNTSELAYKRVQVHDVEVGSYILILAGESVPVDCEVYQGSATITVEHLTGEVKPLEINVGDRVPGGARNLDGRIVVKVIKTWKESTLNKIVQLTEEAQMNKPKLQRWLDEFGEQYSKVVVVLSVAIAIIGPLLFKWPFICTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCQTIAFDKTGTLTTGGLVFKAIEPIYGHRVIQNKSDFSSCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPPISVESFEYFPGKGLVATLHGIKSGTGMGKLLTASLGSVDFITSLCKSKTESRKVQEAVNASSYGREFVCAALLVDEKITLIHLEDRPRPGVLDVIVDLQDHAKLRVMMLTGDHESSARRVANAVGIKEVYCGLKPEDKLSYVKDISRETGGGLIMVGEGINDAPALAAASVGIVLAQRASATAVAVADVLLLRDNILGVPFSIAKSRQTTSLVKQNVALALTSIFLASLPSVLGFLPLWLTVLLHEGGTLMVCLNSIRALNNPTWSWRQDLLHLFNDFSSKIAALTPKPSSSYTEAAQL 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6420544 6430356 - Bda018556.1 Bda04g00194 5216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00194 823 SUPERFAMILY Calcium ATPase, transduction domain A 259 343 IPR008250 -
Bda04g00194 823 PRINTS P-type cation-transporting ATPase superfamily signature 680 699 - -
Bda04g00194 823 PRINTS P-type cation-transporting ATPase superfamily signature 603 614 - -
Bda04g00194 823 PRINTS P-type cation-transporting ATPase superfamily signature 94 108 - -
Bda04g00194 823 PRINTS P-type cation-transporting ATPase superfamily signature 626 636 - -
Bda04g00194 823 PRINTS P-type cation-transporting ATPase superfamily signature 704 716 - -
Bda04g00194 823 Pfam E1-E2 ATPase 258 430 - -
Bda04g00194 823 Gene3D - 461 611 IPR023299 GO:0000166
Bda04g00194 823 Gene3D - 222 348 - -
Bda04g00194 823 SFLD p-type atpase 432 733 IPR044492 -
Bda04g00194 823 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 258 471 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda04g00194 823 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 585 760 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda04g00194 823 SUPERFAMILY Calcium ATPase, transmembrane domain M 186 760 IPR023298 -
Bda04g00194 823 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Bda04g00194 823 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 184 782 IPR027256 GO:0006812|GO:0016021|GO:0019829
Bda04g00194 823 CDD P-type_ATPase_HM 127 782 - -
Bda04g00194 823 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 55 814 - -
Bda04g00194 823 SUPERFAMILY HAD-like 448 780 IPR036412 -
Bda04g00194 823 Gene3D - 443 731 IPR023214 -
Bda04g00194 823 Pfam haloacid dehalogenase-like hydrolase 447 693 - -
Bda04g00194 823 SFLD C1.7: P-type atpase like 432 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00194 Bda-Chr4:6420544 Bda11g00103 Bda-Chr11:1242806 1.67E-57 dispersed
Bda04g00191 Bda-Chr4:6168047 Bda04g00194 Bda-Chr4:6420544 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00194 K01534 - qsu:112030040 1189.87