Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00200 ATGCCTGAAAATACAGTTAATGCTATTGATGATTATATAATTGGGGACACTGATCATTCTGTCGATCCTCCCAGTGCATCTGCTGATATTGATGATGAAAGTGGGAAAGAGAGGAAGATTAAAACAGTCAGAAAAGAAGAGATTTCTACCCCTGTGCATAATGAAAGTTCAAATGTGTTGCACTCTTTCCTGTTGGATGAAAATCATGTTTATGATGGTAGTGAGTCGGGAACAGAAGAAGAGCAGTCCGCTTTCATGAAGGAGCTTGAAAACTTTTTCAAGGAGAGAGCAATGGAATTCAAGCCACCCAAGTTCTATGGAGAGGGCTTGAATTGCCTTAAGTTGTGGAGAGCTGTGAATAGGTTGGGTGGCTACGACAAGGTAACTTCATGCAAATTATGGCGGCAAGTGGGAGAGTCATTCAGGCCACCAAACTTCCACGTTTCTTGCTTCTATGTTTGTTTATGCAGAACTTGCACTACAGTTTCATGGACTTTTCGAGGATTTTACGAAAAGGCACTTCTTGATTATGAGAGGCAAACTCATGGTGGCGAGCTTTCTGTACCTATTGTTTCCAATTCGGAGGCAATTAATATTGAAAACCAGGGATCTGCAGTGGGTAGAGCACGAAGAGATGCTGCTGCACGTGCTATGCAGGGCTGGCATTCACAACGTCTTCTTGGTAATGGTGAAGTTGGTGACCCTGTTATAAAGGATAAAAATTCTCCCTCCTTGCAAAAGCGGGAAAAACAGCTCAAAAGCATTGGTTTACTAAAACGTAAGAAATCACCGTACGTGGAGCATGTTGTGAAGGCTGTGCGTAGCAGAGCATCTAAACCACAATTGGATACAACAGTAGTTGATATTGGACATCCAGCGGATTGGGTGAAGATCAATGTGCAGAAAACTAAAGATTGTTTCGAGGTATATGCTTTAGTTCCAGGACTTCTGCGAGAAGAGGTTCGTGTTCAATCAGATCCCGCAGGACGGCTTGTTATTAGTGGTGAACCTGAGCATCTTGACAACCCGTGGGGTGTCACACCCTTCAAGAAGGTCGTTAGCCTACCTTCAAGGATCGATCCCCATCAAACATCTGCGGTTGTGACCTTGCATGGACAGTTGTTTGTACGCGTCCCGTTTGAGCAGTCAGAGTAA 1155 43.9 MPENTVNAIDDYIIGDTDHSVDPPSASADIDDESGKERKIKTVRKEEISTPVHNESSNVLHSFLLDENHVYDGSESGTEEEQSAFMKELENFFKERAMEFKPPKFYGEGLNCLKLWRAVNRLGGYDKVTSCKLWRQVGESFRPPNFHVSCFYVCLCRTCTTVSWTFRGFYEKALLDYERQTHGGELSVPIVSNSEAINIENQGSAVGRARRDAAARAMQGWHSQRLLGNGEVGDPVIKDKNSPSLQKREKQLKSIGLLKRKKSPYVEHVVKAVRSRASKPQLDTTVVDIGHPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7331564 7343544 + Bda018547.1 Bda04g00200 5222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00200 384 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 25 383 IPR045147 GO:0006357
Bda04g00200 384 ProSiteProfiles ARID domain profile. 79 182 IPR001606 GO:0003677
Bda04g00200 384 SMART ARID_2 76 178 - -
Bda04g00200 384 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 284 384 IPR002068 -
Bda04g00200 384 MobiDBLite consensus disorder prediction 1 37 - -
Bda04g00200 384 Gene3D - 79 188 IPR036431 GO:0003677
Bda04g00200 384 CDD ARID 81 178 - -
Bda04g00200 384 Pfam ARID/BRIGHT DNA binding domain 82 178 IPR001606 GO:0003677
Bda04g00200 384 CDD ACD_sHsps_p23-like 303 379 - -
Bda04g00200 384 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 25 383 - -
Bda04g00200 384 SUPERFAMILY HSP20-like chaperones 294 380 IPR008978 -
Bda04g00200 384 SMART bright_3 80 183 IPR001606 GO:0003677
Bda04g00200 384 SUPERFAMILY ARID-like 75 192 IPR036431 GO:0003677
Bda04g00200 384 Gene3D - 278 384 IPR008978 -
Bda04g00200 384 Pfam Hsp20/alpha crystallin family 301 383 IPR002068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00275 Bda-Chr10:30342155 Bda04g00200 Bda-Chr4:7331564 1.67E-113 transposed
Bda01g01577 Bda-Chr1:51590827 Bda04g00200 Bda-Chr4:7331564 1.09E-131 wgd
Bda10g00272 Bda-Chr10:30258238 Bda04g00200 Bda-Chr4:7331564 4.54E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15792 PF01388 ARID 1.00E-14 CL0123 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00200 - - cmax:111465194 568.926