Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00200 ATGCCTGAAAATACAGTTAATGCTATTGATGATTATATAATTGGGGACACTGATCATTCTGTCGATCCTCCCAGTGCATCTGCTGATATTGATGATGAAAGTGGGAAAGAGAGGAAGATTAAAACAGTCAGAAAAGAAGAGATTTCTACCCCTGTGCATAATGAAAGTTCAAATGTGTTGCACTCTTTCCTGTTGGATGAAAATCATGTTTATGATGGTAGTGAGTCGGGAACAGAAGAAGAGCAGTCCGCTTTCATGAAGGAGCTTGAAAACTTTTTCAAGGAGAGAGCAATGGAATTCAAGCCACCCAAGTTCTATGGAGAGGGCTTGAATTGCCTTAAGTTGTGGAGAGCTGTGAATAGGTTGGGTGGCTACGACAAGGTAACTTCATGCAAATTATGGCGGCAAGTGGGAGAGTCATTCAGGCCACCAAACTTCCACGTTTCTTGCTTCTATGTTTGTTTATGCAGAACTTGCACTACAGTTTCATGGACTTTTCGAGGATTTTACGAAAAGGCACTTCTTGATTATGAGAGGCAAACTCATGGTGGCGAGCTTTCTGTACCTATTGTTTCCAATTCGGAGGCAATTAATATTGAAAACCAGGGATCTGCAGTGGGTAGAGCACGAAGAGATGCTGCTGCACGTGCTATGCAGGGCTGGCATTCACAACGTCTTCTTGGTAATGGTGAAGTTGGTGACCCTGTTATAAAGGATAAAAATTCTCCCTCCTTGCAAAAGCGGGAAAAACAGCTCAAAAGCATTGGTTTACTAAAACGTAAGAAATCACCGTACGTGGAGCATGTTGTGAAGGCTGTGCGTAGCAGAGCATCTAAACCACAATTGGATACAACAGTAGTTGATATTGGACATCCAGCGGATTGGGTGAAGATCAATGTGCAGAAAACTAAAGATTGTTTCGAGGTATATGCTTTAGTTCCAGGACTTCTGCGAGAAGAGGTTCGTGTTCAATCAGATCCCGCAGGACGGCTTGTTATTAGTGGTGAACCTGAGCATCTTGACAACCCGTGGGGTGTCACACCCTTCAAGAAGGTCGTTAGCCTACCTTCAAGGATCGATCCCCATCAAACATCTGCGGTTGTGACCTTGCATGGACAGTTGTTTGTACGCGTCCCGTTTGAGCAGTCAGAGTAA 1155 43.9 MPENTVNAIDDYIIGDTDHSVDPPSASADIDDESGKERKIKTVRKEEISTPVHNESSNVLHSFLLDENHVYDGSESGTEEEQSAFMKELENFFKERAMEFKPPKFYGEGLNCLKLWRAVNRLGGYDKVTSCKLWRQVGESFRPPNFHVSCFYVCLCRTCTTVSWTFRGFYEKALLDYERQTHGGELSVPIVSNSEAINIENQGSAVGRARRDAAARAMQGWHSQRLLGNGEVGDPVIKDKNSPSLQKREKQLKSIGLLKRKKSPYVEHVVKAVRSRASKPQLDTTVVDIGHPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7331564 7343544 + Bda018547.1 Bda04g00200 5222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00200 384 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 25 383 IPR045147 GO:0006357
Bda04g00200 384 ProSiteProfiles ARID domain profile. 79 182 IPR001606 GO:0003677
Bda04g00200 384 SMART ARID_2 76 178 - -
Bda04g00200 384 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 284 384 IPR002068 -
Bda04g00200 384 MobiDBLite consensus disorder prediction 1 37 - -
Bda04g00200 384 Gene3D - 79 188 IPR036431 GO:0003677
Bda04g00200 384 CDD ARID 81 178 - -
Bda04g00200 384 Pfam ARID/BRIGHT DNA binding domain 82 178 IPR001606 GO:0003677
Bda04g00200 384 CDD ACD_sHsps_p23-like 303 379 - -
Bda04g00200 384 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 25 383 - -
Bda04g00200 384 SUPERFAMILY HSP20-like chaperones 294 380 IPR008978 -
Bda04g00200 384 SMART bright_3 80 183 IPR001606 GO:0003677
Bda04g00200 384 SUPERFAMILY ARID-like 75 192 IPR036431 GO:0003677
Bda04g00200 384 Gene3D - 278 384 IPR008978 -
Bda04g00200 384 Pfam Hsp20/alpha crystallin family 301 383 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00200 - - - cmax:111465194 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00275 Bda-Chr10:30342155 Bda04g00200 Bda-Chr4:7331564 1.67E-113 transposed
Bda01g01577 Bda-Chr1:51590827 Bda04g00200 Bda-Chr4:7331564 1.09E-131 wgd
Bda10g00272 Bda-Chr10:30258238 Bda04g00200 Bda-Chr4:7331564 4.54E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15792 PF01388 ARID 1.00E-14 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00200 Bda_Chr04 FPKM 10.349503 7.001776 16.712952 16.286257 2.035412 1.102734 1.133251 0.923275 0.625785