Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00209 TTGATGAGGTCTGGATATGTGTGGATAACAGCCAATTGGTTATCTTCTCTTTTAGATACTAATTCTCCCCTTCCTGATGAGGCCATGGAAGACATTCAAGGTGTTCTTACTTTGCGAATATACATACCAGACTCGGAGCCCAAAAGAAAATTTGTTTCAAGGTGGAGCAATTTGACTAAGGGAAGAGCCGACAGTGGCCCCACTGGATTGAGTACTTATGCTTTTTATGCTTACGACACAGTGTGGGTGCTTGCCCGTGCGATTGACGCATTTTTTAATCACGGAGGAAATCTATCTTTCTCAAATTATTCCAAATTAAGTGGGACTGGTAATTTGCATCTCGACTCTATGAGTGTATTTAATGGTGGAAAATTATTGCTTCAGAGAATTTTGGAGGTTAATATGACGGGCATTACAGGTCCATTCAGATTCACTGCAGAAAGGGACTTAATTCAACCTGCATTTGAAGTTATCAATGTCATTGGAACAGGTGTTAGGAGAGTTGGTTATTGGTCAAATTATTCCGGCTTATCTGTTTTACCTCCGGAAAGTCTTTACTCGAATCCTCCTAATCGTTCTGCTTTAAATCAAAAGCTATACAACGTGATTTGGCCTGGCCAGACGACACAGAGGCCTCGCGGGTGGGCATTTCCATACAATGGCAGACATTTGAGAATTGGAGTGCCGAAACGAGTGAGCTATCTTGAGTTTGTCAGAGAGGTGGATAGTCCAGGCACGTTTACTGGGTATTGCATTGATGTCTTCACTGCCGCAGTTAACTTGTTGCCTTATGATGTTCCCTATCAGTTAATTCCTTTTGGTGATGGTCGTACAAATCCTAGCTCTACTGAGCTTGTTCGATTGATCACCACAGGGGATTTTGATGCAGCAGTAGGTGATATTGCTATTATCACGAATCGAACAAGGATGGTTGATTTCACTCAGCCATATATCGAGTCCGGGTTAGTAATCATTGCTCGGGTGAGGGAGTCAAGTTCTAATGCTTGGGCTTTTCTGAGGCCATTCACTCTAAGCATGTGGCTTGTTACGGCTGTCTTTTTCATCATCGTTGGAACAGTTGTTTGGATTTTGGAACATAGGAGGAACGATCAATTCCGAGGTCCGCCCAGAAAACAACTCATTACAGTTCTATGCTTACTAGATTATCAATTTTCTCTTTTGGTTGCAGGAGAAAAAACTGTCAGCACCCTCGGTCGCATAGTGCTTCTCATATGGTTATTTGTGATTCTGATAATAAACTCAAGCTACACGGCAAATTTGACTTCGATCCTCACAGTACAACAGCTTTCTTCTCCCATCAAAGGAATTGAAACTTTGGTAGCAAGCAATGACCGAATTGGCTACCAGCAGGGTTCATATGCTCGAAATTACCTTATTGAAGAACTCAGTATTCACGAGTCCAGGTTAATTCCTCTAATATCTGCGGCAGATTATTCGAAAGCCCTGAATGACGGGCCACAGAATGGTGGTGTTGCTGCTATTGTTGATGAGCGTGCATATGTAGAGCTCTTCCTTTCAACGCGGTGCGAATTCAGTATTGTCGGTCAAGAGTTCACCAAAAATGGGTGGGGATTCGCCTTTCCACGAGACTCGCCTTTGGTGGTCGACATGTCAACTGCCATTTTGAAACTGGTGGAAAATGGCGATCTCCAAAAGATCCATGATAAATGGCTTACAAGAAGTGCTTGCACCTCACAAACCGCAAATCAAGAGGTGGAAAGGCTTCAGCTTAAAAGCTTTTGGGGGCTCTTTCTGTTGTGTGGATTAGCCTGTTTGCTTTCTCTCTGTGTTTATTTCTGTCTCATGGTGCGGCAGTACGGAAAGCATTACTCCGACGAACTCGAGTCTACAGGACAAGCCTCTCGTTCAGGCCGTCTTCAGACATTTCTATCGTTCGCGGATGAAAAGGAAGAAGTGGTCAAAAGCAGATCCAAAAGACGGCAAATGGAAAGAGCATCCAATCGCAGAAATACCGAAGTAAATAGATCAACAAGTCTCAGCATAGGCTCAACTGGTTCAACTTCTACTGGTCCATGA 2058 43.44 LMRSGYVWITANWLSSLLDTNSPLPDEAMEDIQGVLTLRIYIPDSEPKRKFVSRWSNLTKGRADSGPTGLSTYAFYAYDTVWVLARAIDAFFNHGGNLSFSNYSKLSGTGNLHLDSMSVFNGGKLLLQRILEVNMTGITGPFRFTAERDLIQPAFEVINVIGTGVRRVGYWSNYSGLSVLPPESLYSNPPNRSALNQKLYNVIWPGQTTQRPRGWAFPYNGRHLRIGVPKRVSYLEFVREVDSPGTFTGYCIDVFTAAVNLLPYDVPYQLIPFGDGRTNPSSTELVRLITTGDFDAAVGDIAIITNRTRMVDFTQPYIESGLVIIARVRESSSNAWAFLRPFTLSMWLVTAVFFIIVGTVVWILEHRRNDQFRGPPRKQLITVLCLLDYQFSLLVAGEKTVSTLGRIVLLIWLFVILIINSSYTANLTSILTVQQLSSPIKGIETLVASNDRIGYQQGSYARNYLIEELSIHESRLIPLISAADYSKALNDGPQNGGVAAIVDERAYVELFLSTRCEFSIVGQEFTKNGWGFAFPRDSPLVVDMSTAILKLVENGDLQKIHDKWLTRSACTSQTANQEVERLQLKSFWGLFLLCGLACLLSLCVYFCLMVRQYGKHYSDELESTGQASRSGRLQTFLSFADEKEEVVKSRSKRRQMERASNRRNTEVNRSTSLSIGSTGSTSTGP 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7957263 7959954 - Bda018524.1 Bda04g00209 5231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00209 685 SUPERFAMILY Periplasmic binding protein-like I 2 216 IPR028082 -
Bda04g00209 685 MobiDBLite consensus disorder prediction 647 685 - -
Bda04g00209 685 Gene3D - 1 177 - -
Bda04g00209 685 CDD GluR_Plant 224 565 - -
Bda04g00209 685 Pfam Bacterial extracellular solute-binding proteins, family 3 242 566 IPR001638 -
Bda04g00209 685 Gene3D - 335 470 - -
Bda04g00209 685 Gene3D - 40 152 - -
Bda04g00209 685 Pfam Receptor family ligand binding region 1 162 IPR001828 -
Bda04g00209 685 PANTHER GLUTAMATE RECEPTOR 3.6 1 670 - -
Bda04g00209 685 Gene3D - 494 572 - -
Bda04g00209 685 SUPERFAMILY Periplasmic binding protein-like II 201 567 - -
Bda04g00209 685 MobiDBLite consensus disorder prediction 647 664 - -
Bda04g00209 685 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 670 - -
Bda04g00209 685 MobiDBLite consensus disorder prediction 665 685 - -
Bda04g00209 685 Pfam Ligand-gated ion channel 567 598 IPR001320 GO:0015276|GO:0016020
Bda04g00209 685 SMART GluR_14 223 567 IPR001320 GO:0015276|GO:0016020
Bda04g00209 685 Gene3D - 216 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00209 Bda-Chr4:7957263 Bda11g00980 Bda-Chr11:9538303 0 dispersed
Bda04g00209 Bda-Chr4:7957263 Bda06g00362 Bda-Chr6:5820368 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00209 K05387 - qsu:112001927 967.992