Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00217 ATGAGCGGAGGCTTTTCATACCCTCCCATTGATCCCACCACCTTCGACCTCGTCGTCGTTGGCACTGGTCTACCTGAATCTATAATCGCCGCCGCCGCTTCCTCCCTCGGCAAAACAGTCCTCCATGTTGACCCCAATCCCTTCTACGGCTCCCACTTTTCCTCTCTACCACTCCATGATTTAACGGCTTTTTTCGATTCTCTTTCTTCTTCTTCTTCCCCACCTCCGCCGCCTTTGTCATTCTCTCACTCTACCGACGACCTAGATTATGCATCCGTACATCTCGCCACCAGGCCCCTGTATTCTCACGTCGAGGTCACTTCCTACTGCCCTGATGTTCTCCAAGAACATTCCAGAAAGTTTAACATTGATTTGGCCGGTCCTAGGGTTTTGCTTTGCGCCGATAAATGCATTGACATGATTCTGAAATCAGGTGCTAGCCATTACTTGGAATTCAAGAGCATCGATGCGAGCTATGTGTGCGATGATCATGGGATGTTTTCCAGTGTACCTGACTCTCGCGCCGCGATATTTAAGGACAAGAGTCTCGGGTTGAAAGAGAAGAACCAGTTGATGAGATTTTTCAAGCTGGTTCAGGAGCACTTGGATTCCGACACAGGCGGCGAGCGCACAGGAATTTCTGAGGAAGATTTGGAGACTCCATTTGTTGAATTCTTGAACAAAATGCAGTTGCCTCCCAAGATAAAAACGATTATTCTATATGCTATTGCAATGGTAGAATATGATCAAGAGGGCATTAAAGGATCTACAGACATTGTCAAGACTACAGAGGGGATAAATCGTTTGGCTATTTACAATTCATCAGTTGGCAGGTTTGCTAATGCACCTGGGGCTTTGATTTATCCTATGTATGGTCAAGGAGAACTAGCTCAAGCATTTTGTCGCCGTGCAGCTGTCAAAGGATGTTTGTACGTACTTCGAATGCCTGTTATTGCTCTTCTTGGTGACAAGCACAATGGACAATACAAGGGTGTCAGATTAGCTTCAGGTCAGGATATATTCAGCCACGATTTGGTGCTAGACCCATCCTTCATTGTTCCATTGCCATTTTGTTCATCCCCACCAGATCAGTTAAAACAACGTTTTCAAGATTTAAGTCTTAAAGAAGTTACAGGAAAGGTTGCTAGGGGAATATGTATAGCCAGTTGTTCTTTGATGCCAGATGAATTGAATAGTCTGGTGATATACCCTCCAAAGACTTTGTTTCCTGAACAGGTCAGATCAATTCGACTACTTCAGATTGGGGGAAATTTAGCTGTTTGTCCTTTGGGCATGTCGATTATTTACATTTCCACAGCTTGTGATGAAGCAGAGCAGGGGAAGAAAATACTACACGCTGCCATGGATGCAATTATCTCACTTCTCAGTTCTAGAGATCCTGATGGCCGCTCTCCAGGTGAAGATGGCAAAATGGAGGATGTAAAACCCCCTCTACTCTGGAGTACATCGTATATTCAGGAAATGCCAAGCATGGGTTCATGGGGATCTATTTACTTCTCTCCTATGCCAGATGGAAACATAAACTATGATGATCTTTTGGGGGAAACTTTAAAGTTATTGCAGAAGATGTATCCGCAAGAAGAATTCTTTCCAGAGACCTCACTAGAAAAAACTGATGAGGATGAGGCTGGTCTCGATCTGGACGGTTAA 1671 44.64 MSGGFSYPPIDPTTFDLVVVGTGLPESIIAAAASSLGKTVLHVDPNPFYGSHFSSLPLHDLTAFFDSLSSSSSPPPPPLSFSHSTDDLDYASVHLATRPLYSHVEVTSYCPDVLQEHSRKFNIDLAGPRVLLCADKCIDMILKSGASHYLEFKSIDASYVCDDHGMFSSVPDSRAAIFKDKSLGLKEKNQLMRFFKLVQEHLDSDTGGERTGISEEDLETPFVEFLNKMQLPPKIKTIILYAIAMVEYDQEGIKGSTDIVKTTEGINRLAIYNSSVGRFANAPGALIYPMYGQGELAQAFCRRAAVKGCLYVLRMPVIALLGDKHNGQYKGVRLASGQDIFSHDLVLDPSFIVPLPFCSSPPDQLKQRFQDLSLKEVTGKVARGICIASCSLMPDELNSLVIYPPKTLFPEQVRSIRLLQIGGNLAVCPLGMSIIYISTACDEAEQGKKILHAAMDAIISLLSSRDPDGRSPGEDGKMEDVKPPLLWSTSYIQEMPSMGSWGSIYFSPMPDGNINYDDLLGETLKLLQKMYPQEEFFPETSLEKTDEDEAGLDLDG 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8336474 8341729 + Bda018506.1 Bda04g00217 5239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00217 556 MobiDBLite consensus disorder prediction 537 556 - -
Bda04g00217 556 Gene3D - 12 536 IPR036188 -
Bda04g00217 556 SUPERFAMILY FAD-linked reductases, C-terminal domain 379 494 - -
Bda04g00217 556 Pfam GDP dissociation inhibitor 14 67 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 Pfam GDP dissociation inhibitor 98 448 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 170 285 - -
Bda04g00217 556 PIRSF Rab_ger_ger_transf_A_euk 8 113 IPR001738 GO:0005968|GO:0006886|GO:0018344
Bda04g00217 556 PIRSF Rab_ger_ger_transf_A_euk 82 553 IPR001738 GO:0005968|GO:0006886|GO:0018344
Bda04g00217 556 PRINTS Rab GDI/REP protein family signature 16 34 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 PRINTS Rab GDI/REP protein family signature 34 51 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 PRINTS Rab GDI/REP protein family signature 292 313 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 PRINTS Rab GDI/REP protein family signature 137 153 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 PRINTS Rab GDI/REP protein family signature 187 202 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 PANTHER RAB GDP-DISSOCIATION INHIBITOR 11 540 IPR018203 GO:0005092|GO:0007264
Bda04g00217 556 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 11 540 - -
Bda04g00217 556 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 93 495 - -
Bda04g00217 556 SUPERFAMILY FAD/NAD(P)-binding domain 12 358 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00217 K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A - zju:107424355 686.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00217 Bda-Chr4:8336474 Bda14g01516 Bda-Chr14:24112573 6.33E-29 dispersed
Bda04g00217 Bda-Chr4:8336474 Bda05g00181 Bda-Chr5:17186855 7.22E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1191 . . Bda04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0894 Cone12ag0865 . . . . . . Blo05g00677 . . . . Bpe06g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008575 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 0 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00217 Bda_Chr04 FPKM 2.247549 2.179135 10.670686 10.456247 3.907517 4.650749 3.870125 42.347752 42.435089