Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00245 ATGGAGTGGGTTCGAGGAGAAGAACTTGGCCATGGCAGCTTTGCAACCATCCATCTTGCGATACCAAGCAGGACCTGTGATGGAATTCCTTCTTTTATGGCGGTAAAATCGTCGGACACCATTGGAAATGCCGGCTTTGAGTCGCTTAGGAACGAGAAAGAGACGCTTGATTGTCTTTCAGACTGCTCGCAAATCATAGGCTGTTATGGAGATTGTTACAGCGTCGAAAATGAAGGGCGGTTTTATAATCTGCTTTTAGAGTATGCAAGTGGCGGCAGTTTAGCAGATAAGGTCAAGAAGAGTGGCGGCCGGATTGTGGAATCTGAAATTCGCCGACACACCAGAACGATACTTGAAGGACTTTCTTATATTCACTCAAAAGGGTTCGTTCACTGCGATTTAAAACTAGGAAACATTCTTCTTTTTGGCGACGGCGACGCGAAGATTGCTGATTTTGGACTGGCAAAAAGGGCCGGAGAAAGTCTTGCAAAAACAGAGCATCGGTTTCAATGGAGAGGAACTCCGATTTACATGGCGCCGGAATCTATTAACCAAAACGAGTACGAGCCACCGTGTGATATTTGGGCTCTTGGTTGCGCAGTGGCGGAGATGGCCACCGGAAAACCTGCGTGGAATTTTCCGGCGGACATAAACATTTATGCTCTGTTTTTACACATCGGCCTCAGCGAGGAATTGCCGGTACTTCCAGAAAATTTTTCGCCGGAGGGACACGATTTTCTAAAGAAATGTTTTGTGAAGGATCCCAAAAAGAGGTGGACGGCTGAGATGCTTTTGCATCATCCTTTTGTGGCCGCCGCTGGAAACAACAGCCCCGATGAGCAGTCTCTGTCGCCGAGATGCCCTCTGGAATACGGCGAGTGGTCCTCCTTACAGTCGTCAGTGAGTACCAGCTCTCTTTATAACAGTTCGCCAGAATCTTCACCAGAATCAGGCGAATCATTTAAGGGGGAATTGTTTTCGTGCTTTAGTTCGTCGACTTTGTCCAGCCTATCTCCACCGGCGGATCGTTTCCGTCAGCTGGTGACTAACAGTTCACCTGATTGGGCCGTTTCTAATAGTTGGATGACCGTCAGGTGA 1098 48.09 MEWVRGEELGHGSFATIHLAIPSRTCDGIPSFMAVKSSDTIGNAGFESLRNEKETLDCLSDCSQIIGCYGDCYSVENEGRFYNLLLEYASGGSLADKVKKSGGRIVESEIRRHTRTILEGLSYIHSKGFVHCDLKLGNILLFGDGDAKIADFGLAKRAGESLAKTEHRFQWRGTPIYMAPESINQNEYEPPCDIWALGCAVAEMATGKPAWNFPADINIYALFLHIGLSEELPVLPENFSPEGHDFLKKCFVKDPKKRWTAEMLLHHPFVAAAGNNSPDEQSLSPRCPLEYGEWSSLQSSVSTSSLYNSSPESSPESGESFKGELFSCFSSSTLSSLSPPADRFRQLVTNSSPDWAVSNSWMTVR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19142518 19143615 - Bda018849.1 Bda04g00245 5267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00245 365 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00245 365 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00245 365 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Bda04g00245 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Bda04g00245 365 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 320 - -
Bda04g00245 365 CDD STKc_MAPKKK 2 270 - -
Bda04g00245 365 SUPERFAMILY Protein kinase-like (PK-like) 3 312 IPR011009 -
Bda04g00245 365 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 320 - -
Bda04g00245 365 Gene3D Transferase(Phosphotransferase) domain 1 2 316 - -
Bda04g00245 365 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00245 Bda11g01437 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00245 Bda-Chr4:19142518 Bda11g01438 Bda-Chr11:19518146 4.61E-126 dispersed
Bda12g00555 Bda-Chr12:9248579 Bda04g00245 Bda-Chr4:19142518 1.22E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69587 PF00069 Pkinase 1.90E-53 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00245 - - bhj:120074166 403.29