Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00251 ATGTGGGATCTCAATGACTCGCCTGATCGGAACAGAGACAATCAATCAGAAGCCTATTCTTCTCCCAAGACATCAATCGACGAGTACGATGAAAAGGGTAAACGGGTAGGATCTGTCTCCAATTCCAGCTCTTCAGCCATCGTATTCGACAACGGATCCGATGAAGACGATATCGGCCGGAATAGAGGACCATTCACTGAGAAGGGAGGCAGCAGCAAGCTTTTTGGGTTTTCGGTGACTCACGACGTACCACCAGTGACTCGTCAGTTTTTTCCGTCGGAGTTTGGTAACGGTGCTTCGTCGATCGGCACCGGAAACGGAGGTGGTAACAGTGGATTGTTCCCCCGCGCTCACTGGGTTGGGGTGAAATTCAGCCAGACGGACCAGGTCTCAGGAAATATGTCGGTTGAGATTTCGCAGCCTATGAAGAAGAGTCGGAGAGGCCCTCGGTCCCGGAGCTCTCAGTACCGCGGTGTCACCTTCTACCGGAGGACAGGCCGGTGGGAATCTCATATATGGTTAATTCTAATTGATTTTGCTCACAGTGCATATGACAGGGCAGCCATTAAGTTCCGGGGAGTAGAAGCCGACATAAATTTCAGCATTGAAGATTATGAAAAAGATTTAAAACAGATGAGCAATTTAAGCAAGGAAGAATTCGTTCATGTTCTACGCCGACAAAGCACTGGATTTCCTAGAGGGAGCTCCAAGTATAGGGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGACAATTTCTAGGAAGAAAATACATCTACTTGGGTTTGTTTGATACAGAGATTGAAGCTGCGAGGGCATATGACAAAGCTGCCATTAAATTCAATGGCAAAGAGGCTGTTACCAATTTTGATGCAAGCATCTATGAAAATGAGCTCAACCCAACAGATGCTTCAGCTAATAATGGTGGTGATCACAATCTTGATTTAAGTTTAGGCAATTCGAGCTCAAAGCAATTTAACCCGGCATGTTTTAATGAGGATAGACATCGTCCATCAGGGTCAATACCATTTGACAGAGAGTGGCGAACTCAAGTGATCAGTCCTCAGGAATCAAAGGGAATAAGCAGATATCTTGAGACAGAAACCAAGCAGCTTCTAAGCCAAACTCATCTTCATTCCGCAGCCTCTGATGGAAGGCAAAGATATGGGCAATCCAGGCCGGTGGGGTACCCTATTCTTCTTCATAACTACTACTCTCCTCACCTTCCATCATCAAATTATCAAGTTCAGTTTTCAAGCAGCAGCAACGGATCAGATCGCATAGGAAGTGATCTTTCTCTCTCTTCCAAGCCTCATAATTTTCAATCTGATCCTACTCAAATGTCGGCAACTGCTGCAGCATCATCAGGATTCCAACTGCAGACTCGACCCTCCAAAAATTGGCCCCACAAAAATGGGTTTCACTTTCTTACGTGA 1446 46.13 MWDLNDSPDRNRDNQSEAYSSPKTSIDEYDEKGKRVGSVSNSSSSAIVFDNGSDEDDIGRNRGPFTEKGGSSKLFGFSVTHDVPPVTRQFFPSEFGNGASSIGTGNGGGNSGLFPRAHWVGVKFSQTDQVSGNMSVEISQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLILIDFAHSAYDRAAIKFRGVEADINFSIEDYEKDLKQMSNLSKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGRKYIYLGLFDTEIEAARAYDKAAIKFNGKEAVTNFDASIYENELNPTDASANNGGDHNLDLSLGNSSSKQFNPACFNEDRHRPSGSIPFDREWRTQVISPQESKGISRYLETETKQLLSQTHLHSAASDGRQRYGQSRPVGYPILLHNYYSPHLPSSNYQVQFSSSSNGSDRIGSDLSLSSKPHNFQSDPTQMSATAAASSGFQLQTRPSKNWPHKNGFHFLT 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19847284 19849694 + Bda018862.1 Bda04g00251 5273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00251 481 MobiDBLite consensus disorder prediction 419 475 - -
Bda04g00251 481 PRINTS Ethylene responsive element binding protein signature 276 296 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 MobiDBLite consensus disorder prediction 133 155 - -
Bda04g00251 481 MobiDBLite consensus disorder prediction 36 50 - -
Bda04g00251 481 Gene3D AP2/ERF domain 236 296 IPR036955 GO:0003700|GO:0006355
Bda04g00251 481 SUPERFAMILY DNA-binding domain 236 296 IPR016177 GO:0003677
Bda04g00251 481 SMART rav1_2 155 207 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 SMART rav1_2 237 300 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 CDD AP2 236 296 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 MobiDBLite consensus disorder prediction 419 471 - -
Bda04g00251 481 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 480 - -
Bda04g00251 481 SUPERFAMILY DNA-binding domain 154 202 IPR016177 GO:0003677
Bda04g00251 481 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 480 - -
Bda04g00251 481 Pfam AP2 domain 236 286 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 ProSiteProfiles AP2/ERF domain profile. 237 294 IPR001471 GO:0003700|GO:0006355
Bda04g00251 481 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00754 Bda-Chr3:6358952 Bda04g00251 Bda-Chr4:19847284 4.27E-10 dispersed
Bda04g00251 Bda-Chr4:19847284 Bda14g01250 Bda-Chr14:13001301 5.30E-145 dispersed
Bda15g00186 Bda-Chr15:4427851 Bda04g00251 Bda-Chr4:19847284 1.03E-12 dispersed
Bda04g00251 Bda-Chr4:19847284 Bda09g01480 Bda-Chr9:46582710 2.26E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15796 PF00847 AP2 2.80E-10 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00251 K09284 - tcc:18611171 532.717