Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00312 TGCTGTGGATGCGAACAAGAAGTTTCAATGGCAGAAGTTAGAGTGGAAAACTTGCTAATAAATGTGGAAGGGCTACAAACAATTGAAAAAAAAGGTCCTATGGAAGATACAAGTGATGATCTGCCTGTTTCAGAAGAACATTGGAGTGATGATACGTATTCTGATTACGAGGGCCGAAAACTATCTTGTGGTTCCTTGGAAATGGAGTGCGACGATGTAAATGCCCCGAATTTTTGTACTGAATCCCGTCTAGCACCTGAGACCTCTCATCTAATGGCGAATTCTATAGAAAGTGAATTGACACTTAACAATAGGGAAGGAGAACCATCTGTTTCAGAGCCTTCGTGGCTAGAAGGGGACGAATCTTTGGCTTTGTGGGTAAAGTGGAGAGGGAAATGGCAGGCAGGAGTCAGATGTGCGAGAGCAGACTGGCCGTTAGCAACTTTGAGAGCAAAACCGACTCACGATCGAAAAAATTACTTCGTAATTTTTTTTCCTCATACAAGGAACTATTCTTGGGCAGATACTCTACTTGTCCGGTCTATTAACGAATTCCCAGAGCCTATCATACACAAGACTCATAGAGCTGGTTTGAAAATGGTCAGGGATTTAAATATTGCACGGCGTTTTATAATGAAAAAATTAGCTGTTGCCATACTGAACTTTATCGACCAACTTCATTCAGAGGCTTTGATAGAAAGTGCTCGAGATGTGATGAGTTGGAAGGACTTTGCCATGGAAGTATCACGCTGTAATGGTTATTGTGATCTTGGTAGAATGCTTCTAAAACTGCAGAGCATGATTCTACCCCGCTTGATTAATTCTGACTGGTCTAAACATTCATTACTATCTTGGGTACAACGATGCCAAGATGCTCATACTGCGGAAACTGTTGAAATGCTGAAAGAGGAGTTAGACAATTCTATTTTGTGGACTGAAATCAATGCTCATCGGGATGAATCAATGCATCCCACGTTCTGTTCTGAATGGAAAACCTGGAAGCATGAAGTCATGAAGTGGTTTTCATTATCTGGTTCCTTATCTAGCTGTGAAACTATGCAGCGGCAGACTAATGATACTCCATTATCCACATGTCAGCAACTTGGCAGGAAAAGGCCTAAGCTTGAGATTCGTCGTGCGGAACCGCATTCATCGCAGGTGGAATCCAAAAATTCAGAACCATCTACCAGTCTTCAAATTGATTCTGGGTTTTTTAACAGCCAGGGCGGTGCAAATGCAGCAGTATTAGCATCAGAGTCATGTAAAGAAGAGGCTTCAAGAGATGTTAACTCAACAGAGTCGCCCAGCACCGTGGCTAATAAATGGGATGAGATTTTTGTTGAAACTGGCAATTCGAAGTCAATCCCGCCCATAGAAGCTGAATCGACACCTATTAAAGCTATAATTGGGGCAAGACCTTTAGATACAGGGAATAGAAACAGACAGTGTATAGCATTTATCGAATCGAAGGGAAGGCAATGTGTTAGGTGGGCAAATGAGGGAGATGTTTACTGCTGTGTGCATCTGTCGACACGTTTTTCTGGTAACTCTGCCAAAAAACAGAATATTATCTCTGCCGATGCACCAATGTGCCAAGGTACCACAGTTCTTGGTACTAAATGCAAACATCGCTCTCTGTATGGATCCTCATTCTGTAAAAAGCATGGGCCGATGAGTGAAATGAAATCAAACTATAGTTTCACTGAGATTAGGCTTAAGAGAAAGAATGTGGACATGATTTCTAACTTAGAATCAACAGATGGAAAAGATCTAGTTCTTGTTGGTGATGTTGAAAGTCCTCTGCAAGTAGATCCTCTCTCGGTTGGTTTTGCTGATAACCTTGAACAACATCCTAGTAATGGCAACATTGCCACAGTGGCCTTGCAATGTATTGGCTCCTGCCGGCAAAGTGACAACAGCCCATGTCTGGAAAGTCCAAAACGGCATTCGCTATACTGTGAAAAACATCTACCAAGCTGGCTTAAGCGTGCAAGGAATGGTAAGAGTAGAATAGTATCAAAAGAAGTGTTCATGGAGCTTTTGGGAGATTGTCGCACTCAGGAGGTAAAGATTCATCTGCATCAAGCGTGTGAGCTATTTTATAAGCTCTTTAAAAGTATTTTATCCCTAAGAAACCCGGTTCCCAAGGAAGTTCAGTTTCAATGGGCTCTATCTGAATCCTCAAAAAACTCAGGAGTCAAAGAACTTTTCATAAAATTAGTTCTCCATGAAAAAAAGAGATTGAAAGAGATATGGGGATTCGGTGGTGAAGAATATGCTCGACTGTTGCTGTCTTCAAAGGAAGAACCAGCTCAAATACCATTGATAACTCTCGGTTGTAATGATGATGAAAACTCAATTAGGTGCAAAATTTGCTCTGAAGTGTTTCCAGATGACCAAGCACTCAGCACCCACTTCATGGATGGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGTTATGCTTGTGCCATCTGCCTAGATTCTTTTACGAACAAAAAAGTCCTTGAATCTCATGTTCAGGATAGGCATCATGTGTCGTTCGTTGAGCAGTGCATGCTAATACAGTGTATTCCTTGTGGCAGCCATTTTGGAAATACTGAGCAATTATGGTTGCATGTACTTGCTGTTCATCCTAGCGACTTCAGGTTGTCAAAATTACAGAAGAATTACGGGTCTGCCGGTGAGGATTCTCCTCAGAAACAAGAGCTTAATTCAGTTTCTTTAGAGAAATCCTCAGAGAATATACATGGTGAGAGGAAGTTTATTTGCAGGTTATGTGGGTTAAAGTTTGATTTATTGCCTGATCTTGGTAGTTTCCAACTGGGATGTGGCTGCCCAGATTCAGCATGTCGCCCCGAACTGTGCGATCATGTTTACCTTTTTGATAATGATTTTGATGATGCAAGAGACATTTATGGGAAACGCATGTGTGGGCGATTTCCGTATAACGATAAAGGTCGTGTTATCCTTGAGGAGGGTTACCTTGTATATGAGTGCAATCAAAAGTGCAGTTGTGGCAGAACCTGTCCAAACAGGGTTTTGCAGAATGGCGTTCGAGGATGGGCAGTCAGGGCAGGTGAATCAATTCTACGTGGCATGTTTGTGTGTGAATATATCGGAGAGATTTTGAACGATGAGGAAGCAAAAAAGAGATGTAAAAGGCATGTTAGGGAAGGATGCCACTATTTCCTTGATGTTGATGCTCATACTAATGACATGAGTAGATTGGTCGAGGGATTGTCGAAATATGTAATTGATGCTACTAAATTTGGAAACGTTTCCCGATTCATCAATCACAGCTGCACACCAAATCTGACAAATTATCAAGTTCTTGTTGAAAGCATGGATTATCATCGAGCTCATATCGGTCTTTATGCAAATCGAGATATAGCTATAGGAGAAGAGATAACATTCGACTATCGCTACGAAGTAGTAGATGACGAGGTATATCTATGCTATTGTGGAGCCTCTTCATGTCGTGGGCGTCTTTACTAA 3498 41.6 CCGCEQEVSMAEVRVENLLINVEGLQTIEKKGPMEDTSDDLPVSEEHWSDDTYSDYEGRKLSCGSLEMECDDVNAPNFCTESRLAPETSHLMANSIESELTLNNREGEPSVSEPSWLEGDESLALWVKWRGKWQAGVRCARADWPLATLRAKPTHDRKNYFVIFFPHTRNYSWADTLLVRSINEFPEPIIHKTHRAGLKMVRDLNIARRFIMKKLAVAILNFIDQLHSEALIESARDVMSWKDFAMEVSRCNGYCDLGRMLLKLQSMILPRLINSDWSKHSLLSWVQRCQDAHTAETVEMLKEELDNSILWTEINAHRDESMHPTFCSEWKTWKHEVMKWFSLSGSLSSCETMQRQTNDTPLSTCQQLGRKRPKLEIRRAEPHSSQVESKNSEPSTSLQIDSGFFNSQGGANAAVLASESCKEEASRDVNSTESPSTVANKWDEIFVETGNSKSIPPIEAESTPIKAIIGARPLDTGNRNRQCIAFIESKGRQCVRWANEGDVYCCVHLSTRFSGNSAKKQNIISADAPMCQGTTVLGTKCKHRSLYGSSFCKKHGPMSEMKSNYSFTEIRLKRKNVDMISNLESTDGKDLVLVGDVESPLQVDPLSVGFADNLEQHPSNGNIATVALQCIGSCRQSDNSPCLESPKRHSLYCEKHLPSWLKRARNGKSRIVSKEVFMELLGDCRTQEVKIHLHQACELFYKLFKSILSLRNPVPKEVQFQWALSESSKNSGVKELFIKLVLHEKKRLKEIWGFGGEEYARLLLSSKEEPAQIPLITLGCNDDENSIRCKICSEVFPDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLESHVQDRHHVSFVEQCMLIQCIPCGSHFGNTEQLWLHVLAVHPSDFRLSKLQKNYGSAGEDSPQKQELNSVSLEKSSENIHGERKFICRLCGLKFDLLPDLGSFQLGCGCPDSACRPELCDHVYLFDNDFDDARDIYGKRMCGRFPYNDKGRVILEEGYLVYECNQKCSCGRTCPNRVLQNGVRGWAVRAGESILRGMFVCEYIGEILNDEEAKKRCKRHVREGCHYFLDVDAHTNDMSRLVEGLSKYVIDATKFGNVSRFINHSCTPNLTNYQVLVESMDYHRAHIGLYANRDIAIGEEITFDYRYEVVDDEVYLCYCGASSCRGRLY 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46775280 46782378 + Bda019187.1 Bda04g00312 5334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00312 1165 ProSiteProfiles Pre-SET domain profile. 942 1018 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda04g00312 1165 ProSiteProfiles SET domain profile. 1002 1142 IPR001214 GO:0005515
Bda04g00312 1165 ProSitePatterns Zinc finger C2H2 type domain signature. 857 878 IPR013087 -
Bda04g00312 1165 ProSiteProfiles Post-SET domain profile. 1149 1165 IPR003616 -
Bda04g00312 1165 ProSiteProfiles Zinc finger C2H2 type domain profile. 787 815 IPR013087 -
Bda04g00312 1165 Pfam SET domain 1021 1141 IPR001214 GO:0005515
Bda04g00312 1165 SMART c2h2final6 855 878 IPR013087 -
Bda04g00312 1165 SMART c2h2final6 821 844 IPR013087 -
Bda04g00312 1165 SMART c2h2final6 787 810 IPR013087 -
Bda04g00312 1165 MobiDBLite consensus disorder prediction 371 386 - -
Bda04g00312 1165 Gene3D Classic Zinc Finger 775 847 - -
Bda04g00312 1165 Gene3D SET domain 910 1165 IPR046341 -
Bda04g00312 1165 ProSitePatterns Zinc finger C2H2 type domain signature. 789 810 IPR013087 -
Bda04g00312 1165 Pfam Pre-SET motif 939 1013 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda04g00312 1165 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 939 1165 - -
Bda04g00312 1165 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 938 - -
Bda04g00312 1165 SUPERFAMILY SET domain 936 1162 IPR046341 -
Bda04g00312 1165 Pfam Zinc finger C2H2-type, 3 repeats 823 939 IPR040689 -
Bda04g00312 1165 MobiDBLite consensus disorder prediction 354 403 - -
Bda04g00312 1165 SMART set_7 1010 1148 IPR001214 GO:0005515
Bda04g00312 1165 MobiDBLite consensus disorder prediction 387 403 - -
Bda04g00312 1165 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 939 1165 - -
Bda04g00312 1165 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 938 - -
Bda04g00312 1165 MobiDBLite consensus disorder prediction 30 49 - -
Bda04g00312 1165 ProSiteProfiles Zinc finger C2H2 type domain profile. 821 844 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00312 - - - qsu:111985175 1191.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00312 Bda-Chr4:46775280 Bda06g00001 Bda-Chr6:2001 3.43E-32 dispersed
Bda08g01385 Bda-Chr8:54827056 Bda04g00312 Bda-Chr4:46775280 3.90E-17 dispersed
Bda13g00032 Bda-Chr13:524843 Bda04g00312 Bda-Chr4:46775280 4.63E-12 dispersed
Bda04g00312 Bda-Chr4:46775280 Bda13g01887 Bda-Chr13:43246664 7.86E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15803 PF00856 SET 1.70E-20 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00312 Bda_Chr04 FPKM 8.874791 9.39416 15.767112 16.708317 4.943797 4.949145 4.620866 11.463333 8.961052