Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00314 ATGGCTGAAATTAGAGTTCCAAGAGTAGAACAAGGCCAAACTAAGATCAAGAATGTTCCGATCGCCGTCACTCCAGAAGGATTTTGGTGCTGCCCTTCTCCGGTTGTGTTTCAAAAGACACTAAAAGCTCAAAACCCTCTGAACAAATCCAAATCTTCCTCATCACCACCCAAGGCCTCTGGCCAGAAGAAACAAGCGTTGATTATAGACAAGAAGCCGGCTCTCGCCGAATCAGGATCTCAGTCTATCACCACCGACGATCGTAAATACAGCCCTGATTCGCCTAGATTGGACAGAGAGCCACGACCCAAGATTGAAAATGTTCCCAAGAAAGTTTCGATCGAGTTTGGTGAGCCTGGAACCAGCGATGTGAAGCTCATTTTGCTCGGGAAGCAAGGGATTTGTGTGAAGTTGAGTGTTCATAAGAATGTTTTGGTGGCCAACAGCCATTTTTTTGCTGATAAATTCTTAGAACGCGGAGTTGGTTTTTCTTGCCTGGAGATTGAAGATTGTGAAGATATTGAAATATACGTCGAAACTGTCGGATTGATGTACAGCAAAGAAATGAGACAACGCCTGATCAAGCAAAGTGTTGCTCGGGTTATACGCATTCTCAAGGTTGCAGAGATTCTTGGGTTCAAGTCATGCATGCAGTCATGTCTCGACTATTTGGAAGCAGTTCCATGGGTAGGAGACGAAGAAGAAGAAAGGGTTGTCTCTTCAGTTTTACGGCTCCAAAGAGACGGCCTTGGAGTTACGCCGGTGTTGAAACGAGTATCTTCCGACGTTCTGAAACCACAAAACGACACTCTCTCTCACGTGATCGAGCTTGTACTGAAAAGCAGTGAAGAGAGAAGCCGGCGAGAGATGAAATCGCTGGTCCTAAAGCTTCTTAGAGAGAATAACAATGGCGGGAGCAGTTCAAATCCAGACCTCTGCAACGAAACTATCTATGGGTCCTGCCGTAAGTGCTTGGCTTCTCTGTTGTCACTGTTCAAGCAAGTCGCAGATGAAGATTTCCATGACAGTAAACAACCTCTGGCCAAGAAAATCGCTCTGGAGGCCGATAATTTGTCGTGGCTGTTTGATATTTTGGCCGACGGACAAGCTGCAGATGAATTTGCCTTGATGTGGGCGAACCAGGAAGAGTTATCGGCTCTACACAGAAAGTTACTGGTAAATTCTCGTTACCATGTAAGCTGCATTACAGGTCGGGTTTTCATCGGAATCGGAAAAGGAGAGCTTCTTCCGTCAAAAGAGACCCGTCAATTACTCTTACAGACGTGGCTAGAGCCATTGATGAACGACTACGGTTGGTTGCAGCATGGGTGCCGGTCGTTTGATCGGAAAATTGTGGAGGAAGGAATTGGGAGAACGATTCTGACTCTTCCGCTGGAAGATCAGAAGAGCATACTGCTTTCGTGGCTGGGAAAGTTCCTCAAGGCCGGAGATAACTGCCCGAATCTTCACAGAGCTTTTGAGGTGTGGTGGCGGAGGACTTTCGTCAGACCCTTCGTTGAAGCTGAACCTGCTTCAGTGAGATAG 1545 46.8 MAEIRVPRVEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKTLKAQNPLNKSKSSSSPPKASGQKKQALIIDKKPALAESGSQSITTDDRKYSPDSPRLDREPRPKIENVPKKVSIEFGEPGTSDVKLILLGKQGICVKLSVHKNVLVANSHFFADKFLERGVGFSCLEIEDCEDIEIYVETVGLMYSKEMRQRLIKQSVARVIRILKVAEILGFKSCMQSCLDYLEAVPWVGDEEEERVVSSVLRLQRDGLGVTPVLKRVSSDVLKPQNDTLSHVIELVLKSSEERSRREMKSLVLKLLRENNNGGSSSNPDLCNETIYGSCRKCLASLLSLFKQVADEDFHDSKQPLAKKIALEADNLSWLFDILADGQAADEFALMWANQEELSALHRKLLVNSRYHVSCITGRVFIGIGKGELLPSKETRQLLLQTWLEPLMNDYGWLQHGCRSFDRKIVEEGIGRTILTLPLEDQKSILLSWLGKFLKAGDNCPNLHRAFEVWWRRTFVRPFVEAEPASVR 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46846557 46848377 + Bda019189.1 Bda04g00314 5336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00314 514 Pfam BTB/POZ domain 136 225 IPR000210 GO:0005515
Bda04g00314 514 MobiDBLite consensus disorder prediction 46 61 - -
Bda04g00314 514 MobiDBLite consensus disorder prediction 46 104 - -
Bda04g00314 514 Gene3D Potassium Channel Kv1.1; Chain A 116 240 IPR011333 -
Bda04g00314 514 SUPERFAMILY POZ domain 119 225 IPR011333 -
Bda04g00314 514 MobiDBLite consensus disorder prediction 89 104 - -
Bda04g00314 514 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 509 IPR038920 -
Bda04g00314 514 PANTHER BTB/POZ DOMAIN PROTEIN 1 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00314 - - - tcc:18611011 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00314 Bda-Chr4:46846557 Bda07g00488 Bda-Chr7:6108772 3.60E-112 dispersed
Bda04g00313 Bda-Chr4:46795718 Bda04g00314 Bda-Chr4:46846557 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15805 PF00651 BTB 9.50E-05 CL0033 Bda TR