Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00315 | ATGTCCCAAGACTATCACCAAGGAATGTTAAGCTTCTCCAATGGCGGTTTGGAGAGATCGGCCATGGCCATGGCTCGACAACAAGAGTCGAACCCTCATCAACAACAACAGATCCGGAGGGAGAAGCTGCGGATGCAAGGGTTCGACCCGTCACCGCCGCCGTTAGTAGGGGTAGAAGAGGAAGAATCCGCCGGATTCAATGTTTACGAGAACGCCGGGATGTTATCGGAAATGTTCAATTACCAACCTGAAATGGCGGAGCAGCCGAGTTTCCGACCGGCGAGGCCGGCGAACAACGAGTGGTACGCTAACAGACAAGGAATGGTGGTGGGATTAGGACCATTGGAAGAATTAAAGGCCAGCCGTAATCACCACCATCAGATTTCCACCATTAGTGCAGACTCAGCGGCAGCCATGCAACTTTTTCTGATGAATCCACAGCCAAGGTCGCCATCACCGCCTCCTCCTCCTTCCTCCACCCTCCACATGCTCCTTCCAAATCCATCTTCTTCTCTCCAACCTTATGGTCAGTTCACATGGGTTCCAGAAGGAGGAAACGCAAACCCAGCTAGTCAAATTAGAGGAATTCCTGAAAGTCAAGGACTCTCTCTCTCACTCTCGTCTTCTTTACCACACCTGGAAGCAGCAAAAGCCGAAGAACTGAGACTCGCCGGAAACGGCGGATTCTTGTTCTACAATCAAGGAGGAGGAGCTTCTTCATCATCCCAATATTCATTTAGAAATCTAGTGAATCAAAACCAGCAATTAACTGGCTCAGATCAACCGATTCACGTCGCGTTTGGAACTTCCCTCGGATCAGTAAATTTGCTAAGAAGCTCAAAGTATTCCAAGGCTGCACAAGAACTACTGGAAGAATTTTGCAGCGTCGGGAAAGCTCAGTTGAAGAGAAACAAGTCCATCAATGAAAGAAACTCCAACCCTAGCCCGAATCTGGCAGGTGGCACTAATGGCAGTGGAGGCGGCGGCGGAGGCGGCGGCTCTTCGTCTTCTTCAAAAGATCAACAACCTCCTTTGTCATCTTGTGATAGAATTGAGCATCAAAGGAGGAAGGTCAAACTCCTATCCATGCTTGACGAGGTGGATCGCAGATACCAAAACTACTGCGAGCAAATGCAGATAGTGGTGAATTCATTTGACATGGTGATGGGGTTCGGAGCAGCAGCCCTCTACACGGCCCTCACCCAGAAGGCAATGTCTCGCCACTTTCGATGCCTCAAGGACGCGATTGGCGCGCAGCTAAAGCACAGCTGCGAGCTTCTGGGCGAGAAAGACGCAGGAGGGACGTCTGGTTTGACAAAAGGAGAGACGCCCAGGCTAAAGATGTTGGAGCAGAGCTTGAGAAACCAGAGAGCTTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGCGACCACAACGAGGCTTGCCTGAAAGATCTGTCAACATTTTGAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTATCCAAGCGACGCAGATAAGCAACTGTTGGCTCGACAGACAGGTTTATCAAGAAATCAGGTGTCGAACTGGTTCATTAATGCTAGGGTTAGGCTATGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAATCAAAAGATGAGGAGGGGGAGAGGGGAGGAGGAGGAAGATAG | 1659 | 50.09 | MSQDYHQGMLSFSNGGLERSAMAMARQQESNPHQQQQIRREKLRMQGFDPSPPPLVGVEEEESAGFNVYENAGMLSEMFNYQPEMAEQPSFRPARPANNEWYANRQGMVVGLGPLEELKASRNHHHQISTISADSAAAMQLFLMNPQPRSPSPPPPPSSTLHMLLPNPSSSLQPYGQFTWVPEGGNANPASQIRGIPESQGLSLSLSSSLPHLEAAKAEELRLAGNGGFLFYNQGGGASSSSQYSFRNLVNQNQQLTGSDQPIHVAFGTSLGSVNLLRSSKYSKAAQELLEEFCSVGKAQLKRNKSINERNSNPSPNLAGGTNGSGGGGGGGGSSSSSKDQQPPLSSCDRIEHQRRKVKLLSMLDEVDRRYQNYCEQMQIVVNSFDMVMGFGAAALYTALTQKAMSRHFRCLKDAIGAQLKHSCELLGEKDAGGTSGLTKGETPRLKMLEQSLRNQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKQLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQESKDEEGERGGGGR | 552 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 46953423 | 46957955 | - | Bda019192.1 | Bda04g00315 | 5337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00315 | 552 | CDD | homeodomain | 470 | 531 | IPR001356 | GO:0003677 | |
Bda04g00315 | 552 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 53 | 546 | - | - | |
Bda04g00315 | 552 | Pfam | Homeobox KN domain | 487 | 526 | IPR008422 | GO:0003677|GO:0006355 | |
Bda04g00315 | 552 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Bda04g00315 | 552 | SUPERFAMILY | Homeodomain-like | 471 | 537 | IPR009057 | - | |
Bda04g00315 | 552 | Pfam | Associated with HOX | 277 | 416 | IPR006563 | - | |
Bda04g00315 | 552 | SMART | HOX_1 | 470 | 534 | IPR001356 | GO:0003677 | |
Bda04g00315 | 552 | MobiDBLite | consensus disorder prediction | 304 | 351 | - | - | |
Bda04g00315 | 552 | ProSiteProfiles | 'Homeobox' domain profile. | 467 | 530 | IPR001356 | GO:0003677 | |
Bda04g00315 | 552 | SMART | prehox3 | 271 | 418 | IPR006563 | - | |
Bda04g00315 | 552 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 53 | 546 | - | - | |
Bda04g00315 | 552 | MobiDBLite | consensus disorder prediction | 145 | 168 | - | - | |
Bda04g00315 | 552 | MobiDBLite | consensus disorder prediction | 306 | 348 | - | - | |
Bda04g00315 | 552 | Gene3D | - | 464 | 545 | - | - | |
Bda04g00315 | 552 | MobiDBLite | consensus disorder prediction | 147 | 162 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda04g00315 | Bda14g01214 | CCT | |
Bda04g00315 | Bda14g01214 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01628 | Bda-Chr3:55639780 | Bda04g00315 | Bda-Chr4:46953423 | 9.46E-86 | dispersed | |
Bda04g00315 | Bda-Chr4:46953423 | Bda14g01214 | Bda-Chr14:12216414 | 0 | dispersed | |
Bda04g00315 | Bda-Chr4:46953423 | Bda05g01130 | Bda-Chr5:59513484 | 3.71E-90 | transposed | |
Bda04g00315 | Bda-Chr4:46953423 | Bda09g00034 | Bda-Chr9:536688 | 3.27E-90 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15806 | PF07526 | POX | 1.70E-49 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00315 | - | - | jre:108995343 | 674.47 |