Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00315 ATGTCCCAAGACTATCACCAAGGAATGTTAAGCTTCTCCAATGGCGGTTTGGAGAGATCGGCCATGGCCATGGCTCGACAACAAGAGTCGAACCCTCATCAACAACAACAGATCCGGAGGGAGAAGCTGCGGATGCAAGGGTTCGACCCGTCACCGCCGCCGTTAGTAGGGGTAGAAGAGGAAGAATCCGCCGGATTCAATGTTTACGAGAACGCCGGGATGTTATCGGAAATGTTCAATTACCAACCTGAAATGGCGGAGCAGCCGAGTTTCCGACCGGCGAGGCCGGCGAACAACGAGTGGTACGCTAACAGACAAGGAATGGTGGTGGGATTAGGACCATTGGAAGAATTAAAGGCCAGCCGTAATCACCACCATCAGATTTCCACCATTAGTGCAGACTCAGCGGCAGCCATGCAACTTTTTCTGATGAATCCACAGCCAAGGTCGCCATCACCGCCTCCTCCTCCTTCCTCCACCCTCCACATGCTCCTTCCAAATCCATCTTCTTCTCTCCAACCTTATGGTCAGTTCACATGGGTTCCAGAAGGAGGAAACGCAAACCCAGCTAGTCAAATTAGAGGAATTCCTGAAAGTCAAGGACTCTCTCTCTCACTCTCGTCTTCTTTACCACACCTGGAAGCAGCAAAAGCCGAAGAACTGAGACTCGCCGGAAACGGCGGATTCTTGTTCTACAATCAAGGAGGAGGAGCTTCTTCATCATCCCAATATTCATTTAGAAATCTAGTGAATCAAAACCAGCAATTAACTGGCTCAGATCAACCGATTCACGTCGCGTTTGGAACTTCCCTCGGATCAGTAAATTTGCTAAGAAGCTCAAAGTATTCCAAGGCTGCACAAGAACTACTGGAAGAATTTTGCAGCGTCGGGAAAGCTCAGTTGAAGAGAAACAAGTCCATCAATGAAAGAAACTCCAACCCTAGCCCGAATCTGGCAGGTGGCACTAATGGCAGTGGAGGCGGCGGCGGAGGCGGCGGCTCTTCGTCTTCTTCAAAAGATCAACAACCTCCTTTGTCATCTTGTGATAGAATTGAGCATCAAAGGAGGAAGGTCAAACTCCTATCCATGCTTGACGAGGTGGATCGCAGATACCAAAACTACTGCGAGCAAATGCAGATAGTGGTGAATTCATTTGACATGGTGATGGGGTTCGGAGCAGCAGCCCTCTACACGGCCCTCACCCAGAAGGCAATGTCTCGCCACTTTCGATGCCTCAAGGACGCGATTGGCGCGCAGCTAAAGCACAGCTGCGAGCTTCTGGGCGAGAAAGACGCAGGAGGGACGTCTGGTTTGACAAAAGGAGAGACGCCCAGGCTAAAGATGTTGGAGCAGAGCTTGAGAAACCAGAGAGCTTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGCGACCACAACGAGGCTTGCCTGAAAGATCTGTCAACATTTTGAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTATCCAAGCGACGCAGATAAGCAACTGTTGGCTCGACAGACAGGTTTATCAAGAAATCAGGTGTCGAACTGGTTCATTAATGCTAGGGTTAGGCTATGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAATCAAAAGATGAGGAGGGGGAGAGGGGAGGAGGAGGAAGATAG 1659 50.09 MSQDYHQGMLSFSNGGLERSAMAMARQQESNPHQQQQIRREKLRMQGFDPSPPPLVGVEEEESAGFNVYENAGMLSEMFNYQPEMAEQPSFRPARPANNEWYANRQGMVVGLGPLEELKASRNHHHQISTISADSAAAMQLFLMNPQPRSPSPPPPPSSTLHMLLPNPSSSLQPYGQFTWVPEGGNANPASQIRGIPESQGLSLSLSSSLPHLEAAKAEELRLAGNGGFLFYNQGGGASSSSQYSFRNLVNQNQQLTGSDQPIHVAFGTSLGSVNLLRSSKYSKAAQELLEEFCSVGKAQLKRNKSINERNSNPSPNLAGGTNGSGGGGGGGGSSSSSKDQQPPLSSCDRIEHQRRKVKLLSMLDEVDRRYQNYCEQMQIVVNSFDMVMGFGAAALYTALTQKAMSRHFRCLKDAIGAQLKHSCELLGEKDAGGTSGLTKGETPRLKMLEQSLRNQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKQLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQESKDEEGERGGGGR 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46953423 46957955 - Bda019192.1 Bda04g00315 5337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00315 552 CDD homeodomain 470 531 IPR001356 GO:0003677
Bda04g00315 552 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 53 546 - -
Bda04g00315 552 Pfam Homeobox KN domain 487 526 IPR008422 GO:0003677|GO:0006355
Bda04g00315 552 MobiDBLite consensus disorder prediction 1 52 - -
Bda04g00315 552 SUPERFAMILY Homeodomain-like 471 537 IPR009057 -
Bda04g00315 552 Pfam Associated with HOX 277 416 IPR006563 -
Bda04g00315 552 SMART HOX_1 470 534 IPR001356 GO:0003677
Bda04g00315 552 MobiDBLite consensus disorder prediction 304 351 - -
Bda04g00315 552 ProSiteProfiles 'Homeobox' domain profile. 467 530 IPR001356 GO:0003677
Bda04g00315 552 SMART prehox3 271 418 IPR006563 -
Bda04g00315 552 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 546 - -
Bda04g00315 552 MobiDBLite consensus disorder prediction 145 168 - -
Bda04g00315 552 MobiDBLite consensus disorder prediction 306 348 - -
Bda04g00315 552 Gene3D - 464 545 - -
Bda04g00315 552 MobiDBLite consensus disorder prediction 147 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00315 Bda14g01214 CCT
Bda04g00315 Bda14g01214 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01628 Bda-Chr3:55639780 Bda04g00315 Bda-Chr4:46953423 9.46E-86 dispersed
Bda04g00315 Bda-Chr4:46953423 Bda14g01214 Bda-Chr14:12216414 0 dispersed
Bda04g00315 Bda-Chr4:46953423 Bda05g01130 Bda-Chr5:59513484 3.71E-90 transposed
Bda04g00315 Bda-Chr4:46953423 Bda09g00034 Bda-Chr9:536688 3.27E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15806 PF07526 POX 1.70E-49 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00315 - - jre:108995343 674.47