Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00316 CAGTTTGTTCGCTTTTATGCTCGCGAGCCATTTCCTAGTAAAGTGGCACACTATCTCTACCGTGCAAAATTCATTGATTCCATTCGAATTAGTCTTCGTTCGGATCCATCAACTTCTCTAGCCCCTATCTTAAACAATCGTCTTCTTGATTCATTTGTTGTTACCAATGCAATTCGTTCGGCTCCCTCTGCAGATTCTGCTCTCTTTATCTGCGAGACTCTTGAAAAAAATCCATATTTTTCGCATAACCAGTCTACTATTAATGCACTGGCTACTGTTCTTGCCAAGAACTCCCGCAGTGCAGAGCTCAAATCCCTTGTTGATGCTGTTAGTGCTGGCAAATTCGTAAATGTTTGTTTGAGCTTCATGAATCTCATGCAATGGTTCGGCTGCATTGAAGACCTTGAATCAGTTATTAAAGTATGGGAAGAATACAGGCAGTCAGATAAAGGTTTATGTGCAGAGTCTTATAATGTGGTCATGCAGCTCTATGCACAGCAGAAAATGGATGCAGAGGCATTGGAGGTTTTCCGTAAGTTGATTGATGCAGGGGTAAAACCAAATTGTAGAACTTATACAATAATTATTGACCACCTTGTAAGTTCAGCGAAAATAAGTGCGGCTTTGCAAGTTTTCAATATGTTGCCACTGATGAGGATCAAGCATACTGGAAAGCAGTACTCTGTTTTGGTAAGAGGTTTGGTTGGTGCTAAAAGATTTGAAGATGTTAAAAGGTTACTTACTTGCATGGAGGATGATGGAAAAATGCCTACTCGAAACATGACATTATCATTGCAGTATATGAAGGATGCTGGATTTGTTGATGAGGTCAGCAGGTTCCTACAAGAAGTGGCTCCAGATAAGAGAATAAAAAATATAGTTTGTGGTACAGAGGATAGTGATGAGGAGGAAGATGATGACGAGGTGGAGGAGAACATCAGCAATGCTAATGGAGATGAGGATGCTAATAGGATTAAGTTAAAACCATGGCTGGATCCTAGAGCATTGGCAAAGGCGTTGAATCCATGGAGTCCTAGTGAGGTATCGGCTCTGGAGAATGCAAAAATTGTCTGGACAACCCAATTAGTTTGCAAGATTTTACGAAATTTCAGATCACCCAAAACAGCATGGGAATTCTTCTGCTGGGTTGCTTATCAACCTGGATTCGTTCATGACATCTACACTGTACAGAGAATGATTGTTCATTTGGCCCGCCATGGATGTGTTGAATTGGTTGATAATCTCATATCGAAAGTAAGAAGAGAAGGAATGAGATTACCTTTTTGCACTATCAAGCTGATTATCGACTTTTATGGAATTTCGAAGAATGCTGATGCTGCTCTCAAGGTTTTTCGTAACGACAGAAATCTGTGCGGCCTCATATCAGAATTGAACTTAATGCTGCTTTACTCGTCTTTGTTACGAACATTGACAAAGTGCGGCTTAAATTCCGAAACCTTGAATGTACTCGATGAGATGATTCTCAATGGAATTTCTCCAGATCTCCAGACTTATTCAGGGTTGATGCACTATTTTGCACTGCAGGGAGATGTTACAACGGTGCAGAAACTCTTTTCCAGTGTTAGGCAGAGTGGTCTGGAGCCAGATGCTCATATGTTTAAAGTATTGATTGGAGCTTACTGCAGAAGTGAGAGAGCATCTCTTGCATGGAGGGTGTTTGAAGACATGAGAAATTATAATGTGATGCCTGATAACTGCACAAAAGATTTGCTCGTAAACAGTCTCTGGAAAGAAGGCAAGCGAAGGGAGGCTGCAGCCGTTCTTGAGGCCTGTGAGGAAGTATGTGAATGTCCACGGGCTTTGCCCGGTGATTTATGGACGGTTAGCTCATCAGATCTCACAAAAGTGTATGACACTTACTCAAGCAGCTTCAAGGCCAATGGTGGCTAG 1911 41.6 QFVRFYAREPFPSKVAHYLYRAKFIDSIRISLRSDPSTSLAPILNNRLLDSFVVTNAIRSAPSADSALFICETLEKNPYFSHNQSTINALATVLAKNSRSAELKSLVDAVSAGKFVNVCLSFMNLMQWFGCIEDLESVIKVWEEYRQSDKGLCAESYNVVMQLYAQQKMDAEALEVFRKLIDAGVKPNCRTYTIIIDHLVSSAKISAALQVFNMLPLMRIKHTGKQYSVLVRGLVGAKRFEDVKRLLTCMEDDGKMPTRNMTLSLQYMKDAGFVDEVSRFLQEVAPDKRIKNIVCGTEDSDEEEDDDEVEENISNANGDEDANRIKLKPWLDPRALAKALNPWSPSEVSALENAKIVWTTQLVCKILRNFRSPKTAWEFFCWVAYQPGFVHDIYTVQRMIVHLARHGCVELVDNLISKVRREGMRLPFCTIKLIIDFYGISKNADAALKVFRNDRNLCGLISELNLMLLYSSLLRTLTKCGLNSETLNVLDEMILNGISPDLQTYSGLMHYFALQGDVTTVQKLFSSVRQSGLEPDAHMFKVLIGAYCRSERASLAWRVFEDMRNYNVMPDNCTKDLLVNSLWKEGKRREAAAVLEACEEVCECPRALPGDLWTVSSSDLTKVYDTYSSSFKANGG 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46987682 46989592 + Bda019193.1 Bda04g00316 5338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00316 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Bda04g00316 636 Pfam PPR repeat family 535 582 IPR002885 -
Bda04g00316 636 Pfam PPR repeat family 156 200 IPR002885 -
Bda04g00316 636 TIGRFAM PPR: pentatricopeptide repeat domain 539 571 IPR002885 -
Bda04g00316 636 TIGRFAM PPR: pentatricopeptide repeat domain 156 189 IPR002885 -
Bda04g00316 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Bda04g00316 636 Gene3D Tetratricopeptide repeat domain 56 328 IPR011990 GO:0005515
Bda04g00316 636 Gene3D Tetratricopeptide repeat domain 464 623 IPR011990 GO:0005515
Bda04g00316 636 PANTHER OS01G0167750 PROTEIN 3 633 IPR044175 -
Bda04g00316 636 Gene3D Tetratricopeptide repeat domain 338 463 IPR011990 GO:0005515
Bda04g00316 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Bda04g00316 636 MobiDBLite consensus disorder prediction 295 315 - -
Bda04g00316 636 MobiDBLite consensus disorder prediction 298 315 - -
Bda04g00316 636 Pfam PPR repeat 470 498 IPR002885 -
Bda04g00316 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00316 - - - qsu:112032931 815.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00316 Bda-Chr4:46987682 Bda03g00104 Bda-Chr3:942756 2.15E-10 dispersed
Bda04g00316 Bda-Chr4:46987682 Bda10g00563 Bda-Chr10:39624188 2.07E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g903 . . Bda04g00316 . . . Bma09g00349 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1354 . . . . . . . . . . Bpe06g00244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017282 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00316 Bda_Chr04 FPKM 3.601199 4.47635 5.472816 3.134516 0.544163 0.678422 0.0 0.0 0.0