Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00329 | ATGGATATAACCAATAAGCTCACAAACAACGCCACTACTTGGGATCTTGACCTAATGGCCATGGAAGAACATCTCCTTCATAGCCAAGTTCCTCTCCCTCCCTCCCTCTGGCCGTACTTCCCCACTCCCGTCGATCAAACCACAGCCAATCAAGCACCGACCCCGAGTCAGTTAGGAGATCCAGTGGCGAATCCTACAGACGGCGGCGAACAAGAGTCTGATCGAGAAGAGCTTGGTGCAGTGAAGGAAATGATGTATAGAATCGCATCTATGCAGCCAGTGGACATCGACCCAGCCACCATCCGGAAGCCCAAACGGAAAAACGTTCGAATTAGCGACGACCCTCAGAGCGTCGCGGCCCGTTTACGGAGAGAGAGAATAAGCGAGAAGATACGCATCCTCCAACGTCTCGTTCCGGGAGGAACCAAACTGGACACGGCTTCCATGCTGGACGAAGCAATTCGATACGTCAAGTTCTTGAAGAGACAAATCCGCTTGTTACAGTCCAATCACCATACTCAATGCGTTAATGTCGCCTTTGGGTCATCTTCTTTAATGCCAATAGACTGGCCTTTGAGAGCCAACGGCGGTGCAACCTCCGATGAACCGTGA | 612 | 51.47 | MDITNKLTNNATTWDLDLMAMEEHLLHSQVPLPPSLWPYFPTPVDQTTANQAPTPSQLGDPVANPTDGGEQESDREELGAVKEMMYRIASMQPVDIDPATIRKPKRKNVRISDDPQSVAARLRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSNHHTQCVNVAFGSSSLMPIDWPLRANGGATSDEP | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 47712302 | 47712913 | + | Bda019217.1 | Bda04g00329 | 5351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00329 | 203 | MobiDBLite | consensus disorder prediction | 43 | 61 | - | - | |
Bda04g00329 | 203 | Coils | Coil | 150 | 170 | - | - | |
Bda04g00329 | 203 | Gene3D | - | 115 | 178 | IPR036638 | GO:0046983 | |
Bda04g00329 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 111 | 160 | IPR011598 | GO:0046983 | |
Bda04g00329 | 203 | SMART | finulus | 117 | 166 | IPR011598 | GO:0046983 | |
Bda04g00329 | 203 | Pfam | Helix-loop-helix DNA-binding domain | 121 | 160 | IPR011598 | GO:0046983 | |
Bda04g00329 | 203 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 63 | 180 | IPR045843 | GO:0003700|GO:0006355 | |
Bda04g00329 | 203 | MobiDBLite | consensus disorder prediction | 43 | 74 | - | - | |
Bda04g00329 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 117 | 171 | IPR036638 | GO:0046983 | |
Bda04g00329 | 203 | CDD | bHLH_AtIND_like | 112 | 170 | - | - | |
Bda04g00329 | 203 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 63 | 180 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda04g00329 | Bda10g00372 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00569 | Bda-Chr1:32705315 | Bda04g00329 | Bda-Chr4:47712302 | 1.41E-41 | dispersed | |
Bda04g00329 | Bda-Chr4:47712302 | Bda10g00372 | Bda-Chr10:35118386 | 2.49E-98 | dispersed | |
Bda15g00050 | Bda-Chr15:1977107 | Bda04g00329 | Bda-Chr4:47712302 | 6.32E-13 | dispersed | |
Bda04g00329 | Bda-Chr4:47712302 | Bda03g00209 | Bda-Chr3:1641488 | 2.02E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15807 | PF00010 | HLH | 3.60E-07 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00329 | - | - | peu:105113195 | 214.157 |