Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00329 ATGGATATAACCAATAAGCTCACAAACAACGCCACTACTTGGGATCTTGACCTAATGGCCATGGAAGAACATCTCCTTCATAGCCAAGTTCCTCTCCCTCCCTCCCTCTGGCCGTACTTCCCCACTCCCGTCGATCAAACCACAGCCAATCAAGCACCGACCCCGAGTCAGTTAGGAGATCCAGTGGCGAATCCTACAGACGGCGGCGAACAAGAGTCTGATCGAGAAGAGCTTGGTGCAGTGAAGGAAATGATGTATAGAATCGCATCTATGCAGCCAGTGGACATCGACCCAGCCACCATCCGGAAGCCCAAACGGAAAAACGTTCGAATTAGCGACGACCCTCAGAGCGTCGCGGCCCGTTTACGGAGAGAGAGAATAAGCGAGAAGATACGCATCCTCCAACGTCTCGTTCCGGGAGGAACCAAACTGGACACGGCTTCCATGCTGGACGAAGCAATTCGATACGTCAAGTTCTTGAAGAGACAAATCCGCTTGTTACAGTCCAATCACCATACTCAATGCGTTAATGTCGCCTTTGGGTCATCTTCTTTAATGCCAATAGACTGGCCTTTGAGAGCCAACGGCGGTGCAACCTCCGATGAACCGTGA 612 51.47 MDITNKLTNNATTWDLDLMAMEEHLLHSQVPLPPSLWPYFPTPVDQTTANQAPTPSQLGDPVANPTDGGEQESDREELGAVKEMMYRIASMQPVDIDPATIRKPKRKNVRISDDPQSVAARLRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSNHHTQCVNVAFGSSSLMPIDWPLRANGGATSDEP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47712302 47712913 + Bda019217.1 Bda04g00329 5351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00329 203 MobiDBLite consensus disorder prediction 43 61 - -
Bda04g00329 203 Coils Coil 150 170 - -
Bda04g00329 203 Gene3D - 115 178 IPR036638 GO:0046983
Bda04g00329 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Bda04g00329 203 SMART finulus 117 166 IPR011598 GO:0046983
Bda04g00329 203 Pfam Helix-loop-helix DNA-binding domain 121 160 IPR011598 GO:0046983
Bda04g00329 203 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 180 IPR045843 GO:0003700|GO:0006355
Bda04g00329 203 MobiDBLite consensus disorder prediction 43 74 - -
Bda04g00329 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 171 IPR036638 GO:0046983
Bda04g00329 203 CDD bHLH_AtIND_like 112 170 - -
Bda04g00329 203 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00329 Bda10g00372 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00569 Bda-Chr1:32705315 Bda04g00329 Bda-Chr4:47712302 1.41E-41 dispersed
Bda04g00329 Bda-Chr4:47712302 Bda10g00372 Bda-Chr10:35118386 2.49E-98 dispersed
Bda15g00050 Bda-Chr15:1977107 Bda04g00329 Bda-Chr4:47712302 6.32E-13 dispersed
Bda04g00329 Bda-Chr4:47712302 Bda03g00209 Bda-Chr3:1641488 2.02E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15807 PF00010 HLH 3.60E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00329 - - peu:105113195 214.157