Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00334 | ATGGTGAGGGACGACTTGTGCATAACGGTTCCGGCCTTTTTCCGGTGTCCGATCTCGCTCGACGTCATGAAGTCTCCTGTTAGTCTCTGCACCGGAGCTACCTACGATCGCTCCAGCATCCAGCAATGGCTCGGCAATGTTAATGGCAGAGCTTGTGGGAATATTAATTTGATTTCCTGCCTAATTTCAATCTCGATGCTGAAATGCGTCAAAATCAAGTCAGTTCACCTCGGAGTAATCAAATCGCTGACAAAGCTTCTTTCAGAGCCAAACTCAACCGCAAGCGTCTCTACAACCCAAAAGGCCCTGAAATTGCTCGAAATGGCTTCATCGGTTAAAGACGGGAGGTCGGAGATTTGCGCTAACTCAGATTGCGTAGAGGCGATCCTACAGAAGCTGCTGAAGGTGTCGAATCCAGCGACAGAGCACGCTGTTACAATCTTGTGGAGCGTTTGTTATCTTTTCCGCGATCCGGCGGCGCAAGAGGCGGTGACGAAGGCCAACGGATTGACGAAAATCCTGCTGTTGATACAGAGCAACTGCTCGCCGCCGATCCGGCAAATGGCGATGGATTTGCTGAAAATTTTCAGAATCAATTCGAAATCGTGTTTATCGAGCTACGATACAAAGACTACTCACATCATGCCATGTTAG | 654 | 48.93 | MVRDDLCITVPAFFRCPISLDVMKSPVSLCTGATYDRSSIQQWLGNVNGRACGNINLISCLISISMLKCVKIKSVHLGVIKSLTKLLSEPNSTASVSTTQKALKLLEMASSVKDGRSEICANSDCVEAILQKLLKVSNPATEHAVTILWSVCYLFRDPAAQEAVTKANGLTKILLLIQSNCSPPIRQMAMDLLKIFRINSKSCLSSYDTKTTHIMPC | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 48223308 | 48224571 | - | Bda019231.1 | Bda04g00334 | 5356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00334 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 55 | IPR013083 | - | |
Bda04g00334 | 217 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED | 57 | 217 | - | - | |
Bda04g00334 | 217 | SUPERFAMILY | ARM repeat | 60 | 201 | IPR016024 | - | |
Bda04g00334 | 217 | Gene3D | - | 56 | 196 | IPR011989 | - | |
Bda04g00334 | 217 | PANTHER | WDSAM1 PROTEIN | 57 | 217 | IPR045185 | GO:0061630 | |
Bda04g00334 | 217 | PANTHER | WDSAM1 PROTEIN | 4 | 48 | IPR045185 | GO:0061630 | |
Bda04g00334 | 217 | SMART | Ubox_2 | 13 | 70 | IPR003613 | GO:0004842|GO:0016567 | |
Bda04g00334 | 217 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED | 4 | 48 | - | - | |
Bda04g00334 | 217 | ProSiteProfiles | U-box domain profile. | 9 | 94 | IPR003613 | GO:0004842|GO:0016567 | |
Bda04g00334 | 217 | Pfam | U-box domain | 10 | 46 | IPR003613 | GO:0004842|GO:0016567 | |
Bda04g00334 | 217 | SUPERFAMILY | RING/U-box | 6 | 48 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00334 | Bda-Chr4:48223308 | Bda08g00854 | Bda-Chr8:14286390 | 1.75E-17 | dispersed | |
Bda04g00334 | Bda-Chr4:48223308 | Bda11g00203 | Bda-Chr11:2590679 | 7.73E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00334 | - | - | cmax:111478747 | 243.432 |