Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00334 ATGGTGAGGGACGACTTGTGCATAACGGTTCCGGCCTTTTTCCGGTGTCCGATCTCGCTCGACGTCATGAAGTCTCCTGTTAGTCTCTGCACCGGAGCTACCTACGATCGCTCCAGCATCCAGCAATGGCTCGGCAATGTTAATGGCAGAGCTTGTGGGAATATTAATTTGATTTCCTGCCTAATTTCAATCTCGATGCTGAAATGCGTCAAAATCAAGTCAGTTCACCTCGGAGTAATCAAATCGCTGACAAAGCTTCTTTCAGAGCCAAACTCAACCGCAAGCGTCTCTACAACCCAAAAGGCCCTGAAATTGCTCGAAATGGCTTCATCGGTTAAAGACGGGAGGTCGGAGATTTGCGCTAACTCAGATTGCGTAGAGGCGATCCTACAGAAGCTGCTGAAGGTGTCGAATCCAGCGACAGAGCACGCTGTTACAATCTTGTGGAGCGTTTGTTATCTTTTCCGCGATCCGGCGGCGCAAGAGGCGGTGACGAAGGCCAACGGATTGACGAAAATCCTGCTGTTGATACAGAGCAACTGCTCGCCGCCGATCCGGCAAATGGCGATGGATTTGCTGAAAATTTTCAGAATCAATTCGAAATCGTGTTTATCGAGCTACGATACAAAGACTACTCACATCATGCCATGTTAG 654 48.93 MVRDDLCITVPAFFRCPISLDVMKSPVSLCTGATYDRSSIQQWLGNVNGRACGNINLISCLISISMLKCVKIKSVHLGVIKSLTKLLSEPNSTASVSTTQKALKLLEMASSVKDGRSEICANSDCVEAILQKLLKVSNPATEHAVTILWSVCYLFRDPAAQEAVTKANGLTKILLLIQSNCSPPIRQMAMDLLKIFRINSKSCLSSYDTKTTHIMPC 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48223308 48224571 - Bda019231.1 Bda04g00334 5356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00334 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 55 IPR013083 -
Bda04g00334 217 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 57 217 - -
Bda04g00334 217 SUPERFAMILY ARM repeat 60 201 IPR016024 -
Bda04g00334 217 Gene3D - 56 196 IPR011989 -
Bda04g00334 217 PANTHER WDSAM1 PROTEIN 57 217 IPR045185 GO:0061630
Bda04g00334 217 PANTHER WDSAM1 PROTEIN 4 48 IPR045185 GO:0061630
Bda04g00334 217 SMART Ubox_2 13 70 IPR003613 GO:0004842|GO:0016567
Bda04g00334 217 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 48 - -
Bda04g00334 217 ProSiteProfiles U-box domain profile. 9 94 IPR003613 GO:0004842|GO:0016567
Bda04g00334 217 Pfam U-box domain 10 46 IPR003613 GO:0004842|GO:0016567
Bda04g00334 217 SUPERFAMILY RING/U-box 6 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00334 Bda-Chr4:48223308 Bda08g00854 Bda-Chr8:14286390 1.75E-17 dispersed
Bda04g00334 Bda-Chr4:48223308 Bda11g00203 Bda-Chr11:2590679 7.73E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00334 - - cmax:111478747 243.432