Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00338 ATGCTGCCCTCAATCTCCAGTCCATCCCATTCTCCGTCCTTGATTTCCATTACATCTACTTTCGATCTCGATTCTTTCCTTTTTGGTAGGAAAATGGCTCGTACCAAACAAACTGCTCGTAAATCCACAGGCGGGAAAGCTCCTCGGAAGCAATTAGCGACAAAGGCCGCAAGGAAATCAGCGCCGGCGACGGGTGGAGTTAAGAAACCGCACAGATTCAGGCCTGGAACGGTGGCTTTGAGAGAGATCCGGAAGTACCAGAAAAGCACGGAGCTACTGATCCGGAAGCTTCCTTTCCAGAGGCTAGTTCGAGAAATTGCTCAAGATTTCAAAACTGATCTCCGGTTTCAGAGCAGCGCCGTCGCCGCCCTTCAGGAAGCAGCGGAGGCATACTTGGTTGGTTTGTTTGAGGATACTAATTTGTGCGCGATCCATGCTAAGAGAGTTACTATTATGCCGAAGGATATCCAACTTGCAAGGAGAATCCGAGGCGAAAGAGCTTAG 504 49.6 MLPSISSPSHSPSLISITSTFDLDSFLFGRKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48420359 48420862 + Bda019236.1 Bda04g00338 5360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00338 167 SUPERFAMILY Histone-fold 33 164 IPR009072 GO:0046982
Bda04g00338 167 SMART h35 65 167 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 MobiDBLite consensus disorder prediction 34 72 - -
Bda04g00338 167 PANTHER HISTONE H3 20 167 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 ProSitePatterns Histone H3 signature 2. 98 106 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 ProSitePatterns Histone H3 signature 1. 46 52 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 145 166 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 34 48 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 89 106 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 65 86 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 111 129 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 48 62 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 PRINTS Histone H3 signature 129 145 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bda04g00338 167 Pfam Core histone H2A/H2B/H3/H4 32 163 IPR007125 GO:0003677
Bda04g00338 167 Gene3D Histone, subunit A 33 167 IPR009072 GO:0046982
Bda04g00338 167 PANTHER - 20 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00338 K11253 H3; histone H3 - pale:102889188 256.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00338 Bda10g00351 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00338 Bda-Chr4:48420359 Bda05g00470 Bda-Chr5:51083892 5.30E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1239 . . Bda04g00338 Bda10g00351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe10g00242 Bpe06g00279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000133 8 11 8 7 8 7 11 7 5 4 6 7 6 5 6 10 7 12 7 7 6 8 7 7 6 4 7 9 7 5 215
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00338 Bda_Chr04 FPKM 15.359573 14.781964 16.208427 17.35745 16.652126 18.147398 16.97571 16.135025 14.322754