Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00339 ATGGCAGATGGTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCAAGAGCTGTTTTTCCCAGTATTGTAGGGCGACCTAGACACACTGGTGTTATGGTTGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCTATCGAGCATGGAATAGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACTTTTTACAATGAGCTACGGGTTGCTCCTGAAGAGCACCCAGTACTGCTCACAGAGGCTCCCCTTAATCCGAAGGCTAATAGAGAAAAGATGACTCAGATCATGTTTGAAACATTTAATGTCCCTGCCATGTATGTTGCCATTCAAGCTGTTCTATCTCTGTATGCAAGTGGTCGTACAACTGGAATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTTCCCATTTACGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTCTAGACCTTGCTGGTCGTGATCTTACCGATGCTTTGATGAAGATTCTAACAGAAAGAGGTTACATGTTCACCACAACTGCTGAACGGGAAATTGTCCGAGATATGAAAGAAAAGCTTGCCTATGTTGCTCTTGATTATGAGCAGGAGCTGGAAACTTCTAAGAGTAGTTCCTCTGTTGAGAAGAACTATGAATTGCCTGATGGTCAAGTTATTACAATTGGAGCAGAGAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCACTCATTGGAATGGAAGCTGCTGGAATTCATGAGACTACTTACAACTCTATTATGAAGTGTGACGTGGATATCAGAAAAGATCTGTATGGAAACATTGTCCTTAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTTGCACCACCAGAAAGAAAATACAGTGTGTGGATTGGAGGTTCAATCCTTGCATCGCTCAGCACATTCCAGCAGATGTGGATCTCGAAGGGTGAGTATGATGAGTCTGGCCCGTCTATTGTCCACAGAAAGTGCTTCTGA 1134 44.44 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48461589 48462987 + Bda019239.1 Bda04g00339 5361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00339 377 Pfam Actin 5 377 IPR004000 -
Bda04g00339 377 Gene3D - 140 340 - -
Bda04g00339 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bda04g00339 377 Gene3D - 10 371 - -
Bda04g00339 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bda04g00339 377 PANTHER ACTIN 1 376 IPR004000 -
Bda04g00339 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bda04g00339 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bda04g00339 377 PRINTS Actin signature 238 254 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 51 62 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 63 85 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 142 161 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 28 37 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 117 130 IPR004000 -
Bda04g00339 377 PANTHER ACTIN 1 376 - -
Bda04g00339 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bda04g00339 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bda04g00339 377 SMART actin_3 7 377 IPR004000 -
Bda04g00339 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00339 K10355 ACTF; actin, other eukaryote - dcr:108214750 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00206 Bda-Chr2:37365864 Bda04g00339 Bda-Chr4:48461589 2.71E-24 dispersed
Bda04g00339 Bda-Chr4:48461589 Bda11g01374 Bda-Chr11:16934926 0 dispersed
Bda05g00455 Bda-Chr5:50845297 Bda04g00339 Bda-Chr4:48461589 1.40E-68 dispersed
Bda05g00660 Bda-Chr5:54948986 Bda04g00339 Bda-Chr4:48461589 4.30E-42 dispersed
Bda10g00975 Bda-Chr10:44008815 Bda04g00339 Bda-Chr4:48461589 9.29E-66 dispersed
Bda04g00339 Bda-Chr4:48461589 Bda15g00357 Bda-Chr15:6440329 0 transposed
Bda04g00339 Bda-Chr4:48461589 Bda14g00128 Bda-Chr14:873558 0 transposed
Bda04g00339 Bda-Chr4:48461589 Bda15g00349 Bda-Chr15:6357586 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.7e-214 739.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.7e-213 738.4
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT2G37620 96.2 2.3e-189 658.3
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT2G37620 96.1 6.0e-174 607.1
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT2G37620 96.2 7.8e-174 606.7
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.1e-211 731.5
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.3e-210 728.0
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT5G59370 96.2 9.5e-188 652.9
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-173 605.9
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT5G59370 96.2 3.3e-172 601.3
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 9.4e-212 732.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.0e-210 729.2
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G46520 96.4 4.3e-188 654.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT3G46520 97.4 6.0e-174 607.1
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G46520 96.5 1.5e-172 602.4
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.9e-213 737.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 6.5e-213 736.5
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G12110 96.7 7.8e-190 659.8
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G12110 96.8 2.7e-174 608.2
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT3G12110 96.4 2.7e-174 608.2
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 5.7e-209 723.4
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.5e-209 723.0
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G18780 92.9 5.8e-185 643.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G18780 93.3 2.4e-170 595.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT3G18780 92.2 4.4e-169 590.9
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.0e-209 724.9
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.6e-209 724.5
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT1G49240 92.9 5.8e-185 643.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT1G49240 93.3 2.4e-170 595.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT1G49240 92.5 1.5e-169 592.4
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.6e-217 751.1
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 5.7e-217 750.0
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT5G09810 96.4 3.0e-189 657.9
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT5G09810 96.4 7.8e-174 606.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT5G09810 96.5 1.0e-173 606.3
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.9 2.7e-57 218.0
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 7.9e-57 216.5
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT2G19760 74.4 3.7e-54 207.6
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.3e-54 206.8
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 77.1 5.1e-56 213.8
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-55 212.2
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29350 75.9 3.3e-55 211.1
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 75.6 1.3e-54 209.1
Bda01g02037 BCT,CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.0e-37 151.8
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29340 79.1 3.2e-61 231.1
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT4G29340 79.1 1.6e-60 228.8
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 75.4 2.8e-57 218.0
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 71.6 7.6e-55 209.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00339 Bda_Chr04 FPKM 19.621328 22.904549 27.879419 25.303686 26.867352 25.923534 25.533459 20.332197 19.910542