Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00339 ATGGCAGATGGTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCAAGAGCTGTTTTTCCCAGTATTGTAGGGCGACCTAGACACACTGGTGTTATGGTTGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCTATCGAGCATGGAATAGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACTTTTTACAATGAGCTACGGGTTGCTCCTGAAGAGCACCCAGTACTGCTCACAGAGGCTCCCCTTAATCCGAAGGCTAATAGAGAAAAGATGACTCAGATCATGTTTGAAACATTTAATGTCCCTGCCATGTATGTTGCCATTCAAGCTGTTCTATCTCTGTATGCAAGTGGTCGTACAACTGGAATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTTCCCATTTACGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTCTAGACCTTGCTGGTCGTGATCTTACCGATGCTTTGATGAAGATTCTAACAGAAAGAGGTTACATGTTCACCACAACTGCTGAACGGGAAATTGTCCGAGATATGAAAGAAAAGCTTGCCTATGTTGCTCTTGATTATGAGCAGGAGCTGGAAACTTCTAAGAGTAGTTCCTCTGTTGAGAAGAACTATGAATTGCCTGATGGTCAAGTTATTACAATTGGAGCAGAGAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCACTCATTGGAATGGAAGCTGCTGGAATTCATGAGACTACTTACAACTCTATTATGAAGTGTGACGTGGATATCAGAAAAGATCTGTATGGAAACATTGTCCTTAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTTGCACCACCAGAAAGAAAATACAGTGTGTGGATTGGAGGTTCAATCCTTGCATCGCTCAGCACATTCCAGCAGATGTGGATCTCGAAGGGTGAGTATGATGAGTCTGGCCCGTCTATTGTCCACAGAAAGTGCTTCTGA 1134 44.44 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48461589 48462987 + Bda019239.1 Bda04g00339 5361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00339 377 Pfam Actin 5 377 IPR004000 -
Bda04g00339 377 Gene3D - 140 340 - -
Bda04g00339 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bda04g00339 377 Gene3D - 10 371 - -
Bda04g00339 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bda04g00339 377 PANTHER ACTIN 1 376 IPR004000 -
Bda04g00339 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bda04g00339 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bda04g00339 377 PRINTS Actin signature 238 254 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 51 62 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 63 85 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 142 161 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 28 37 IPR004000 -
Bda04g00339 377 PRINTS Actin signature 117 130 IPR004000 -
Bda04g00339 377 PANTHER ACTIN 1 376 - -
Bda04g00339 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bda04g00339 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bda04g00339 377 SMART actin_3 7 377 IPR004000 -
Bda04g00339 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00206 Bda-Chr2:37365864 Bda04g00339 Bda-Chr4:48461589 2.71E-24 dispersed
Bda04g00339 Bda-Chr4:48461589 Bda11g01374 Bda-Chr11:16934926 0 dispersed
Bda05g00455 Bda-Chr5:50845297 Bda04g00339 Bda-Chr4:48461589 1.40E-68 dispersed
Bda05g00660 Bda-Chr5:54948986 Bda04g00339 Bda-Chr4:48461589 4.30E-42 dispersed
Bda10g00975 Bda-Chr10:44008815 Bda04g00339 Bda-Chr4:48461589 9.29E-66 dispersed
Bda04g00339 Bda-Chr4:48461589 Bda15g00357 Bda-Chr15:6440329 0 transposed
Bda04g00339 Bda-Chr4:48461589 Bda14g00128 Bda-Chr14:873558 0 transposed
Bda04g00339 Bda-Chr4:48461589 Bda15g00349 Bda-Chr15:6357586 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00339 K10355 - dcr:108214750 755.362