Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00345 ATGGTTCTAATGGATATAGATGATTTCCGAACGATAATGGACACTGCTGGAGTTGACGTCTGGACACTGATTGATTCGGCTATGGAGGTAGCTTCAATTGATTACGGAACCCTTTTGAAACAGCGCAGGGATGGAATTGTTGAGCGGCTGTTCGCATTGACTTCGGCTCCAAATCTCCACCGCCATGGGAGGTCGAATGGTGAAGAAAATATGCTTCGGGTAGTGAACGAGAGCCGCAGTGGACTGAAGGAAAGGTCCCCCTCCACTCCGCATTCCATGGACGGGGACGACGGGTTGGATCCGTCCGGAGGATTGATTGATGATGAGCAGAAGAAGATCTTAGATATCAAGGAACAGCTTGAAATTCCTCACCAGCCTGAAGATGGCCTGGTTGATTTGCTTCAAAGCTTGGCAGACATGGATATAACATTCCAAGCTCTCAAAGAAACTGATATTGGAAGACACGTAAATCAATTGAGAAAGCATTCATCGAATACTGTTCGGAAATTAGTGAAACATCTTGTCCGGAAATGGAAGGATATAGTTGATGAATGGGTGAGGGTCAATCAGCCGGGAGAGCAGAATACAGCCACATTAATAGCCGATGAAGACGAATCGCCTCAGTGGAAAATTCCTCGTAATGGTCTTCATCAGGTTCCTGATTTTGCATACTCTCCTAATCCGCACAATGGAAGCTCTGGTTCGGACAGAAATAATTCAGAACCCGAGCCAAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAACCGAAGCCAAAGGCAGTTCAACAAAGAGAAGCGCCACGGAAATCGGTGCAATCCAGACAGTGGGAGGAGAAAGAAAGCAATTTTGATTCAGAGAGATTGGATTCAGCTAGAAGGAGGCTTCAAGCAAACTACAAAGAAGCTGAAAATGCTAAAAAGCAAAGAACTATCCAAGTGATGAGCATCCATGAAATACCGAAGCCGAAGAACACATTTTATGCGAAGAACAAAGCCGGCGGGGGAGGTGGTTCGCACGGCAGGAATTGGTAA 1032 46.71 MVLMDIDDFRTIMDTAGVDVWTLIDSAMEVASIDYGTLLKQRRDGIVERLFALTSAPNLHRHGRSNGEENMLRVVNESRSGLKERSPSTPHSMDGDDGLDPSGGLIDDEQKKILDIKEQLEIPHQPEDGLVDLLQSLADMDITFQALKETDIGRHVNQLRKHSSNTVRKLVKHLVRKWKDIVDEWVRVNQPGEQNTATLIADEDESPQWKIPRNGLHQVPDFAYSPNPHNGSSGSDRNNSEPEPKPKPKPKPKPKPKPKAVQQREAPRKSVQSRQWEEKESNFDSERLDSARRRLQANYKEAENAKKQRTIQVMSIHEIPKPKNTFYAKNKAGGGGGSHGRNW 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48760103 48764019 - Bda019252.1 Bda04g00345 5367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00345 343 CDD TFIIS_I 111 183 - -
Bda04g00345 343 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 343 - -
Bda04g00345 343 MobiDBLite consensus disorder prediction 196 290 - -
Bda04g00345 343 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 106 197 IPR035441 -
Bda04g00345 343 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 343 IPR044790 -
Bda04g00345 343 Coils Coil 285 312 - -
Bda04g00345 343 MobiDBLite consensus disorder prediction 322 343 - -
Bda04g00345 343 ProSiteProfiles TFIIS N-terminal domain profile. 108 185 IPR017923 -
Bda04g00345 343 MobiDBLite consensus disorder prediction 77 104 - -
Bda04g00345 343 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 111 194 IPR035441 -
Bda04g00345 343 MobiDBLite consensus disorder prediction 258 290 - -
Bda04g00345 343 MobiDBLite consensus disorder prediction 225 239 - -
Bda04g00345 343 Pfam TFIIS helical bundle-like domain 133 182 IPR017923 -
Bda04g00345 343 SMART TFS2_5 113 184 IPR003617 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00345 - - - cmos:111463303 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00345 Bda-Chr4:48760103 Bda03g00584 Bda-Chr3:4850870 2.44E-17 dispersed
Bda10g00366 Bda-Chr10:34854151 Bda04g00345 Bda-Chr4:48760103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1212 . . Bda04g00345 . . . Bma09g00240 . . . Cma03g01070 Cma07g00779 Car03g00964 Car07g00767 Sed14g0207 Cpe19g00546 Cpe10g00356 Bhi03g01399 Tan03g1346 Cmetu04g0645 . Hepe04g1136 . . Cla01g01539 Cam01g1610 Cec04g1256 Cco04g1328 Clacu01g1636 Cmu01g1523 Cre04g1201 . . . . Lsi01g01123 . . . . . . . . Bpe06g00282 . . . Cmo03g01065 Cmo07g00803 . . . . . . . . . . . . . . . . . . . . . Csa06g02814 Chy02g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003587 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 2 1 4 3 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15808 PF08711 Med26 2.30E-12 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00345 Bda_Chr04 FPKM 1.079301 0.558217 76.224403 77.075562 86.723007 71.388519 85.015816 0.76783 0.56843