Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00359 ATGGGGCTTCTCAGCATTATTCGAAAAATCAAACGGAAAGAGAAAGAAATGCGCATACTCATGGTTGGGCTTGATAATTCAGGGAAAACTACGATTGTTTTGAAGATAAATGGGGATGACACAAGTGTGATCAGCCCTACACTTGGATTCAACATCAAAACCATCACTTATCAAAAGTATATGCTCAATATATGGGATGTCGGGGGCCAAAAAACCATAAGATCCTATTGGAGGAACTATTTTGAGGAAACTGATGGTTTGGTGTGGGTAGTTGACAGTTCAGATCTTAGAAGGTTGGACGATTGCAAGATGCAACTTGATAATCTTTTGAAAGAAGAGAGGCTTTCAGGAGCTTCCCTGCTCATACTAGCAAATAAGCAGGACATTAAAGGTGCTCTTACAACGGAGGAAATTGCTAAAGTTCTAAACTTGGAAGCCATGGATAGGACCAGGCACTGGAATATTGTTGGGTGCAGTGCGTATACTGGTGAGGGGCTTCTCGAGGGATTTGATTGGCTTGTCCAAGATGTCGCCTCCCGAATCTATGTGCTCGACTAA 558 42.47 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGDDTSVISPTLGFNIKTITYQKYMLNIWDVGGQKTIRSYWRNYFEETDGLVWVVDSSDLRRLDDCKMQLDNLLKEERLSGASLLILANKQDIKGALTTEEIAKVLNLEAMDRTRHWNIVGCSAYTGEGLLEGFDWLVQDVASRIYVLD 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49719895 49721588 - Bda019284.1 Bda04g00359 5381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00359 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 177 IPR027417 -
Bda04g00359 185 Pfam ADP-ribosylation factor family 4 176 IPR006689 GO:0003924|GO:0005525
Bda04g00359 185 SMART arf_sub_2 1 181 - -
Bda04g00359 185 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Bda04g00359 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 1 185 IPR044612 GO:0003924
Bda04g00359 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 1 185 - -
Bda04g00359 185 SMART rab_sub_5 17 180 - -
Bda04g00359 185 Gene3D - 5 182 IPR027417 -
Bda04g00359 185 TIGRFAM small_GTP: small GTP-binding protein domain 15 148 IPR005225 GO:0005525
Bda04g00359 185 PRINTS GTP-binding SAR1 protein signature 151 175 IPR006689 GO:0003924|GO:0005525
Bda04g00359 185 PRINTS GTP-binding SAR1 protein signature 18 41 IPR006689 GO:0003924|GO:0005525
Bda04g00359 185 PRINTS GTP-binding SAR1 protein signature 73 98 IPR006689 GO:0003924|GO:0005525
Bda04g00359 185 PRINTS GTP-binding SAR1 protein signature 46 70 IPR006689 GO:0003924|GO:0005525
Bda04g00359 185 ProSiteProfiles small GTPase Arf family profile. 10 177 - -
Bda04g00359 185 CDD Arl2 3 176 IPR045873 GO:0003924
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00359 K07943 ARL2; ADP-ribosylation factor-like protein 2 - jre:109005517 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00359 Bda-Chr4:49719895 Bda10g00792 Bda-Chr10:42274407 2.61E-133 dispersed
Bda06g00640 Bda-Chr6:8919632 Bda04g00359 Bda-Chr4:49719895 7.66E-38 dispersed
Bda06g00678 Bda-Chr6:9400583 Bda04g00359 Bda-Chr4:49719895 9.20E-38 dispersed
Bda04g00359 Bda-Chr4:49719895 Bda01g01281 Bda-Chr1:48206116 2.22E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1171 . Blo16g00100 Bda04g00359 . . . . Bma15g00900 . . . . . . Sed14g0208 Cpe19g00547 . Bhi03g01403 Tan03g1361 Cmetu08g1663 . Hepe04g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01069 Csa06g02816 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004650 3 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 2 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00359 Bda_Chr04 FPKM 17.408157 15.479617 18.370897 19.822622 15.980929 8.648719 14.529163 11.830764 10.244047