Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00382 ATGAACGGTGGGAACAACCGTAAACGGCCTGCGCCGTCGCCAGCGCAGAAACCTTCGCCGTCTCCGCAGGTAGAGCGGCTGGCAACATCGCAAGAGGAAGAGTATTTGGACGAAGACGTCTTCCTCGATGAAACTCTGTTAACCGAGGACGAGCTCATCCTGCGCGACATTGAGGAGCGCCAGGCCCTCGCTTCCTGTCTCACGAAGTGGACTCGCCCTCCGCTGTCTTCCGCTTATGTTTCTCAATCTCAGAGCGTTGTGTTTCAGCAGCTGGAAATCGATTACGTGATTGGAGACAGTAACCGAGAATTATTGCCTAATTCCGCTGGCCCCGCCGCCATCATCAGAATTTTTGGTGTTACCAGAGAAGGACACAGTGTTTGCTGCAACGTCCATGGATTTGAACCTTACTTTTATATCAGCTGTCCTCCTGGAATGGGTCCTGATGATATCTCCCGGTTCCACCAAGTTCTTGAGGCGAGAATGAGGGAGGTAAATAAAAACAGTAAGGTGCCCAAATATGTTCATCGAATCGAGTTAGTTCAAAAAAGAAGTATCATGTACTATCAGCAACAAACGTCTCATCCTTTCCTCAAAATTGTAGTTGCACTACCAACAATGGTCACAAGCTGCCGGGGTATTCTTGACAGAGGCATACAAATTGATGGGCTTGGAATGAAGAGCTTCATGACTTATGAAAGCAATGTTCTTTTTGCTCTGCGATTCATGATTGATTGCAACATTGTTGGTGGAAATTGGATTGAAGTACCTGTGGGAAAATATAGGAAAACAGCAAAAATCCTGTCATACTGTCAGTTGGAGTTTGATTGCCTTATCCCCTTAACAGCCCTTGGTAGTTATTCAGAGTTGATCAGCCATGCCCCAGAAGGTGAATTTTCAAAGATGGCTCCCTTCCGGATATTGAGTTTTGATATTGAGTGTGCAGGTCGTAAAGGCCATTTTCCCGAGCCCACCCATGATCCTGTCATCCAGGTGGCCAATTTAGTTACTCTCCAAGGGGAGGACCAGCCTTTTATCCGCAATGTCATGACCCTTAACTCCTGCTCTTCTATAGCTGGTGTTGATGTAATGTCATTTGAGACAGAGAGAGAAGTTTTACTTGCCTGGAGGGATTTTATCCGCGAGGTGGATCCTGATGTGGTGATTGGATATAACATTTGCAAATTCGATTTGCCTTATCTCATCGAGAGAGCTGAGAAATTGGGAATCTCTGAATTTCCAATTCTGGGTCGCATCAGAAACAGCAGGGTTCGGGTCAAAGATACAACTTTCTCTTCTAGACAGCTTGGAACTAGGGAAGGTAAAGAAATTACAATAGAAGGGAGAGTTCAATTTGATTTGCTCCAGGTTATGCAACGTGATTACAAACTGAGTTCTTATTCACTGAATTCTGTCTCGTCACATTTTCTTTCTGAGCAGAAAGAAGATGTACACCATTCCATTATATCTGATTTACAGAACGGTAATTCTGAAACCAGGAGGCGTTTGGCTGTTTATTGTTTGAAGGACGCTTATCTTCCACAACGGCTGTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTCACAGGTGTCCCAATTTCGTTTCTTCTTTCTAGAGGGCAGAGCATTAAGGTATTATCTCAACTTCTTCGGAAGGCAAAACAAAAGAATCTCGTGATTCCAAATGCTAAACAAGCAGGATCTGAGCAAGGAACTTTTGAAGGTGCCACTGTTTTAGAGGCAAGAGCAGGATTTTATGAAAAGCCCATTGCTACATTAGATTTTGCGTCCTTGTATCCCTCCATTATGATGGCATATAATTTATGTTACTGCACCTTGGTAACTCCTGAAGATGTTCGCAAACTAAACCTTCCTCAAGAACTAGTTAATAGAACTCCTTCCGGGGAAACATTTGTACGTTCAAATTTGCAAAAGGGTATACTTCCTGAAATTCTCGAAGAACTATTAACTGCTCGAAAAAGAGCAAAAGCAGATCTAAAGGAAGCTAAAGATCCTTTTGAGAAGGCGGTATTAGATGGGCGGCAGCTGGCTTTGAAGATAAGTGCAAATTCAGTATATGGATTTACAGGAGCCACAGTTGGCCAGTTACCTTGCTTAGAGATATCTTCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACATACAAAAAAGCTTGTAGAAGATAAATTTACCACACTCGGTGGCTATGAACACAATGCTGAGGTTATATATGGCGATACAGATTCAGTGATGGTGCAGTTTGGCGTGCCCACTGTGGAAGAGGCAATGAACTTGGGAAGGGAAGCGGCTGAATATATCAGTGGCACTTTTATTAAACCCATTAAACTAGAGTTCGAGAAGGTTTATTATCCATATCTTTTAATTAGCAAAAAGAGATATGCCGGTTTGTTATGGACCAATAGGGAAAAGTTTGACAAAATGGATACAAAAGGCATTGAAACAGTTCGAAGAGACAATTGTCTGTTGGTAAAAAACCTAGTCACTGAGTGCCTGAACAAAATTCTTATTGACAGAGACATTCCTGGTGCAGTACAATATGTCAAGAACATAATTTCCGATCTTCTTATGAACCGCATGGATTTATCACTTCTGGTCATTACCAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGCAAGAAAACACAAACATCATTGGTCTGGCAACAACTGGCTAGGAAATTACCCCGCGAGTTATACTCGGCCACCACACTGTTTTCTCACAAAATACAAAACATAATTACGAAAAAAACACTTCAGCCTTCTATATCTTTTTTTAAACTGCCCACAACTTCCCCAAACTACAACTGCTTCATATGTCAAACCATCCTTTTACCTCTCCTTTTATATCGAGATGCTGCTACAGCTCCGACTGTTGGGGATCGAGTACCTTATGTGATAATCAAAGCCGCAAAAGGAGCCAAAGCGTACGAGAAGTCAGAAGATCCTATTTTTGTTCTAGAAAATAACATACCAATCGATCCTCAATATTATCTTGAAAATCAAATTAGCAAGCCACTATTACGAATTTTTGAACCCATATTGAAGAATGCCAGCAAGGAACTTCTTCATGGAAGTCATACGCGATCTATCTTTATCTCGACTCCTTCAAACAGCGGCATAATGAAATTTGCCAAGAAACAACTTACTTGCATTGGCTGCAAAGCTCTACTGAGCAACACGGATAAAACTTTGTGCTCACACTGCAAAGGGAGGGAAGCAGAACTTTACTGCAAAGCTGTGACAAATGTATCAGAGCTTGAGATGCTTTTTGGGAGGCTGTGGACACAGTGCCAAGAATGTCAGGGATCTCTTCACCAAGATGTCCTTTGCACTAGTCGTGATTGTCCAATATTTTATCGTAGAAAGAAAGCACAGAAAGACATGGCTGAGGCCAGGATGCAATTAGATCGCTGGAACTTTTAA 3501 42.39 MNGGNNRKRPAPSPAQKPSPSPQVERLATSQEEEYLDEDVFLDETLLTEDELILRDIEERQALASCLTKWTRPPLSSAYVSQSQSVVFQQLEIDYVIGDSNRELLPNSAGPAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEARMREVNKNSKVPKYVHRIELVQKRSIMYYQQQTSHPFLKIVVALPTMVTSCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKILSYCQLEFDCLIPLTALGSYSELISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFIRNVMTLNSCSSIAGVDVMSFETEREVLLAWRDFIREVDPDVVIGYNICKFDLPYLIERAEKLGISEFPILGRIRNSRVRVKDTTFSSRQLGTREGKEITIEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPQELVNRTPSGETFVRSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMNLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLLWTNREKFDKMDTKGIETVRRDNCLLVKNLVTECLNKILIDRDIPGAVQYVKNIISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKKTQTSLVWQQLARKLPRELYSATTLFSHKIQNIITKKTLQPSISFFKLPTTSPNYNCFICQTILLPLLLYRDAATAPTVGDRVPYVIIKAAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSNTDKTLCSHCKGREAELYCKAVTNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARMQLDRWNF 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50727878 50747174 - Bda019326.3 Bda04g00382 5404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00382 1166 SUPERFAMILY Ribonuclease H-like 112 542 IPR012337 -
Bda04g00382 1166 CDD POLBc_delta 577 1040 - -
Bda04g00382 1166 SMART polmehr3 303 762 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda04g00382 1166 MobiDBLite consensus disorder prediction 1 30 - -
Bda04g00382 1166 Pfam DNA polymerase family B, exonuclease domain 121 472 IPR006133 -
Bda04g00382 1166 PRINTS DNA-directed DNA-polymerase family B signature 687 699 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda04g00382 1166 PRINTS DNA-directed DNA-polymerase family B signature 748 756 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda04g00382 1166 PRINTS DNA-directed DNA-polymerase family B signature 595 608 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda04g00382 1166 Gene3D - 804 926 IPR042087 -
Bda04g00382 1166 Gene3D DNA Polymerase, chain B, domain 1 91 267 - -
Bda04g00382 1166 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 1166 - -
Bda04g00382 1166 TIGRFAM pol2: DNA polymerase (pol2) 366 907 - -
Bda04g00382 1166 Gene3D Helix hairpin bin 651 703 - -
Bda04g00382 1166 Gene3D - 928 1049 IPR042087 -
Bda04g00382 1166 ProSitePatterns DNA polymerase family B signature. 750 758 IPR017964 GO:0000166|GO:0003676
Bda04g00382 1166 Pfam C4-type zinc-finger of DNA polymerase delta 1076 1147 IPR025687 -
Bda04g00382 1166 Coils Coil 1147 1166 - -
Bda04g00382 1166 Pfam DNA polymerase family B 536 909 IPR006134 GO:0000166|GO:0003677
Bda04g00382 1166 Pfam DNA polymerase family B 977 1039 IPR006134 GO:0000166|GO:0003677
Bda04g00382 1166 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 1166 - -
Bda04g00382 1166 SUPERFAMILY DNA/RNA polymerases 561 1041 IPR043502 -
Bda04g00382 1166 CDD DNA_polB_delta_exo 300 528 - -
Bda04g00382 1166 Gene3D Palm domain of DNA polymerase 578 803 IPR023211 -
Bda04g00382 1166 Gene3D - 304 522 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00382 Bda-Chr4:50727878 Bda12g00410 Bda-Chr12:4970474 1.22E-85 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00382 K02327 - qsu:112011411 1551.18