Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00384 ATGGCTGCAACTGCGACATTGACGATTCATCTCTCTCGCCTTTCCCGCCATTTATCTTTCCTTCATCCCTGTCGTCGTTCATTTCTTCCGCCCAGGCCTTTCAGTGACTGTTTTTTCCGCCGCGAACGTTGGCGGAGCTACTGCGTCTTCTCATGCCCTAAGATTTTATCCAGGCGATGTTCTGTCCCTGCTTCTGTGATTTCTCGAGATTGTACGAATCATGCTGGTGTGGATGATGAAACATACGATGTGATAGTTGTTGGAGGAGGACATGCAGGGTGTGAAGCTGCGCTTGCATCTGCTCGTTTAGGGGCAAAAACTCTTCTTCTCACTCTTAATATTGACAGAATTGCTTGGCAGCCTTGTAATCCAGCGGTTGGTGGACCAGCAAAATCTCAGCTAGTTCATGAAGTGGATGCCCTTGGTGGTGAAATTGGGAAGATTGCTGATAGGTACACTCCCAACCTTTCTATCCGAGAAGCAATGGTGACAAATATACTAATGGGCAAGAATGATAACGTGGAAGGAGTTTGTACATTCTTTGGCATGAAATTTTATGCTCCATCTGTTGTTCTCACGACGGGAACCTTTATGAGTGGTAAAATTTGGATTGGTAGAACCTCTATGCCTGCAGGAAGAGCTGGTGAATCAGCTTCACATGGACTCACTGAAAACTTACAGGGTCTTGGATTTGAAACTGATCGGTTAAAGACAGGAACCCCAGCACGTGTAGACAGCCGCACTGTGGATTTTTCTGGACTAGAACCTCAACATGGTGATGAAGAGGTCAGTTGGTTTAGTTTTGACCCTGATTTCCATGTTGAGAGGGAGCAAATGTGTTGCTTTCTGACACGCACAACAAAGAGCACTCACCAACTTATTAAAGAAAACTTGCATGAAACTCCCACTTATGGAGGCTGGGTTGAAGCAAAGGGGCCTAGATATTGTCCTTCCATTGAAGATAAGATTGTGAGATTTCAAGATAAAGAGTCCCATCAAATATTTCTTGAACCAGAGGGCAGAAGTGTTCCTGAGCTCTATGTACAGGGTTTTTCAACTGGATTACCTGAAAGATTACAGTTGCCACTTTTGAGAACTTTACCTGGACTTGAAAAATGTTCTATGCTGAGACCTGCTTATGCTGTAGAGTATGATTTCTTGCCTGCTCATCAGTGTAGCAGGTCTCTAATGACAAAGAAGATCAGTGGTCTTTTCTTCTCTGGTCAAATAAATGGGACCACAGGCTATGAAGAAGCAGCAGCACAGGGTATAATTTCTGGAATCAACGCTGCAAGGCATTCAGATGGCAAGTCCCTGATTGTTCTTGAGAGGGAAAGTAGTTATATAGGAACATTAATTGACGACCTGGTGACGAAGGACCTTCGAGAGCCTTACCGTATGTTGACAAGCCGCTCTGAACACCGACTACTTCTTCGATCCGATAATGCTGATAGCCGACTTACACCTTTGGGCCGTGAAATTGGTTTAATAGACGACAGACGCTGGAAGCTCTACCAAGAAAAGCAAGCTCGAATTTTGGAAGAAAAAAAGAGGCTAAAAGCCGTGCGAATTTCTGGAGGAGATTTGGCTGCTGAGATTACCTATCTATCAGGTCAGACAGCAAAGGACTCTTCAACACTTGAAAGCCTTCTTAAGAAACCACATATAGAATATAAAGTACTGGATAAGCATGGTTTTGGCAATAAGCTCTTGTCTAGAGCAGAGAAAGATTGTGTGGAAATTGACATCAAGTACGAGGGATTCATATTGCGCCAGCAAAGCCAACTGCAACAGGCAAGTTTTCAATGTTCCGACTACAAAACCATTTTATTTTTAATGATCCATCAGCAACACAAACCATTACCAGAGGACTTGGATTATCATGCTATGACAACGTTGTCTCTTGAATCACGGGAGAAGCTTTCTAAGGTGAGGCCACAAACTATAGGTCAAGCAAGCAGAGTAGGTGGGGTGAACCCTGCTGACATAACTGCTCTCCTTATTATTCTTGAGGCCAATAGAAGGAAAGCTCAGGAAGCAAAAAGGCATGGTTCCATCAAAACAGATTCAGATCAATTTCAAGACCCTTTGACTAACACAATAAGTTGTTAG 2112 43.66 MAATATLTIHLSRLSRHLSFLHPCRRSFLPPRPFSDCFFRRERWRSYCVFSCPKILSRRCSVPASVISRDCTNHAGVDDETYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKIADRYTPNLSIREAMVTNILMGKNDNVEGVCTFFGMKFYAPSVVLTTGTFMSGKIWIGRTSMPAGRAGESASHGLTENLQGLGFETDRLKTGTPARVDSRTVDFSGLEPQHGDEEVSWFSFDPDFHVEREQMCCFLTRTTKSTHQLIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQIFLEPEGRSVPELYVQGFSTGLPERLQLPLLRTLPGLEKCSMLRPAYAVEYDFLPAHQCSRSLMTKKISGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARILEEKKRLKAVRISGGDLAAEITYLSGQTAKDSSTLESLLKKPHIEYKVLDKHGFGNKLLSRAEKDCVEIDIKYEGFILRQQSQLQQASFQCSDYKTILFLMIHQQHKPLPEDLDYHAMTTLSLESREKLSKVRPQTIGQASRVGGVNPADITALLIILEANRRKAQEAKRHGSIKTDSDQFQDPLTNTISC 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50851084 50859492 + Bda019331.1 Bda04g00384 5406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00384 703 Pfam Glucose inhibited division protein A 83 151 IPR040131 -
Bda04g00384 703 Pfam Glucose inhibited division protein A 153 437 IPR040131 -
Bda04g00384 703 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 441 667 IPR026904 -
Bda04g00384 703 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 75 151 IPR002218 GO:0008033|GO:0050660
Bda04g00384 703 Gene3D - 621 671 IPR044920 -
Bda04g00384 703 Gene3D - 153 264 IPR036188 -
Bda04g00384 703 Gene3D - 76 152 IPR036188 -
Bda04g00384 703 Gene3D - 353 497 IPR036188 -
Bda04g00384 703 TIGRFAM gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 153 672 IPR004416 GO:0002098
Bda04g00384 703 Hamap tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 80 675 IPR004416 GO:0002098
Bda04g00384 703 ProSitePatterns Glucose inhibited division protein A family signature 1. 312 326 IPR020595 -
Bda04g00384 703 PANTHER PROTEIN MTO1 HOMOLOG, MITOCHONDRIAL 75 151 IPR004416 GO:0002098
Bda04g00384 703 MobiDBLite consensus disorder prediction 680 703 - -
Bda04g00384 703 Gene3D - 498 587 - -
Bda04g00384 703 SUPERFAMILY FAD/NAD(P)-binding domain 81 299 IPR036188 -
Bda04g00384 703 SMART GIDA_assoc_3_2 583 668 - -
Bda04g00384 703 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 153 677 IPR002218 GO:0008033|GO:0050660
Bda04g00384 703 PANTHER PROTEIN MTO1 HOMOLOG, MITOCHONDRIAL 153 677 IPR004416 GO:0002098
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00384 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - qsu:112008561 1085.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00361 Bda-Chr4:49785891 Bda04g00384 Bda-Chr4:50851084 0 dispersed
Bda04g00384 Bda-Chr4:50851084 Bda04g01226 Bda-Chr4:62839037 2.39E-168 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00384 Bda_Chr04 FPKM 15.142621 16.482695 19.537203 21.064035 25.820608 22.73921 26.683815 20.711443 18.735001