Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda04g00456 | ATGGCCACCACTGGTAGTCCTGGGGTTGGGTCTTTAGTTTGGTTGGAAGATCCTGAAGTAGCTTGGATTGATGGAGAAGTTTTAGAGGTTAATCGCGAAGATATTAAAGTTCTATGCACCTCCGGGAAAACAGTTGTTGTTACAGCATCCAGTGTCTATCCAAAGGATGCAGAAGTTCCACCTTGTGGGGTTGATGACATGACAAGGCTTGCTTATTTGCATGAACCAGGAGTTCTTCAAAATTTGAGATTGAGATATGACATCAATGAAATATATACATATACAGGAAATATACTGATTGCCGTAAATCCTTTTAGAAGATTACCTCACCTTTATGATAGCCATATGATGACACAATATAAAGGGGCAGCCTTTGGTGAGCTGAGTCCACATCCTTTCGCAGTCGCTGATGCGGCATACAGACTTATGAGAAATGACGGAGTAAGTCAATCAATATTGGTTAGTGGAGAGAGTGGGGCAGGTAAAACAGAAAGTACAAAATTGCTAATGCGATATCTTGCTTACATGGGAGGAAGGGCAGCAGCAGAAGGCAGGTCTGTTGAGCAGCAAGTTTTAGAGTCCAATCCTGTTCTAGAAGCATTTGGCAATGCAAAGACGGTTCGAAACAACAATTCAAGTCGCTTCGGTAAGTTTGTCGAAATTCAATTTGATCAAAATGGGAGAATATCAGGAGCTGCTGTCAGAACTTACCTGCTTGAAAGATCACGTGTTTGTCAAGTGTCCGATCCAGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCAGCGCCTCCAGAGGATATTGAGAGGTACAAATTGGGAAACCCAAGAACCTTTCACTATTTGAATCAATCAAATTGCTATGATTTGGACGGTGTTGATGATCGCAAGGAGTATTTTGAAACAAGGAGAGCGATGGATATTGTTGGAATAAGTTCTGAAGAGCAGGATGGGATTTTTCGAGTGGTGGCTGCGATTCTACATCTTGGAAATGTTGAGTTTGCAAAAGGGAAAGAAGCCGATTCCTCTGTGCCAAAAGATGAAAAATCTCGGTTCCATCTTAAAACGGCTGCTGAGCTGTTCATGTGTGATGAGAAAGCTTTAGAAGATTCTCTCTGCAAGCGGGTGATTGTCACTCGTGATGAAACAATCACAAAATGTCTGGATCCTACTGCTGCAGTTCTTAGTAGAGATGCTTTGGCTAAAGTTGTGTACTCGAGATTGTTTGACTGGCTTGTGGATAAAATAAACAATTCAATTGGTCAAGATCCAAACTCAAAAGTTTTAATCGGGGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAACAATTTTGCATCAATTTGACGAATGAGAAGCTTCAACAACATTTTAATCAGCACGTTTTCAAAATGGAGCAAGAAGAATACACTAAAGAAGAAATTGATTGGAGTTATATTGATTTTGTTGACAATCAAGATATTCTTGATCTTATTGAAAAGAAACCTGGTGGCATCATTGCTCTTCTAGATGAAGCATGTATGTTTCCAAGATCAACTCATGAAACATTTGCCCAAAAGCTGTACCAGACTTTCAAAAATCATAAACGCTTTACCAAACCTAAATTAGCACGGAGCGATTTCACTATTTGTCATTATGCCGGTGATGTAACCTATCAAACTGAATTGTTTCTGGACAAGAATAAAGACTATGTTGTTGCTGAACATCAAGCTCTGTTGAATGCTTCCAATTGTTCCTTTGTGTCGCGTTTGTTTCCCCCATTAGCTGAAGAATCCAAATCTTCAAAATTCTCTTCAATCGGTACTCGGTTTAAGCAACAATTACAATCATTGCTTGAAACTCTTAGTTCAACAGAGCCGCATTACATTCGTTGTGTAAAACCCAATAATCTACTAAAACCTGCCATTTTTGAGAATCAAAATGTTCTTCAACAACTGCGTTGTGGGGGTGTCATGGAGGCAATTAGGATTAGCTGCGCTGGATACCCGACAAGGAAAACATTTGATGAATTTATTGACCGTTTTGGTCTTCTTGCTCCTGAAGTTTTGGATAGAAGCTCCGACGAAGTAACTGCTTGCAAGAGGCTGCTCGAGAAGGTTGAACTTCAAGGATTCCAGGTTGGCAAGACAAAGGTGTTTTTAAGGGCTGGCCAGATGGCCGATCTTGATGGCAGAAGGACTGAGATCTTAGGCAGATCTGCCAGCATTATTCAGCGGAAATTTCGCTCTTATCTTTCAAGGAGAAGTTTCATCTTGCTTCGGAAATCAGCTTTACGAATTCAAGCTGCATGCAGAGGACATCTTTCTCGGCAAGTTTATGAGAGCATGCGGAGAGAAGCTTCTTCATTGATGATCCAAAAGAATTTGCGCATGTATCTTCATAGGAAAGCTTATAAAGATTTGTATTCCTCTGCCGTATCTATCCAAACTGGTATGCGTGGAATGACAGCTCGAAATGAGCTACGCTTCAGAAGACAGACTAAAGCATCAATCATTATTCAGAGCCATTGCAGAAAATACTTGGCACAGCTGCATTACAGAAAAGAAAAGAAAGCAGCAATTACCACACAATGTGCTTGGCGAGGAAGATGTGCTCGGAAAGAGTTAAAGAAGCTTAAAATGGCTGCAAGAGAAACGGGAGCACTCCAAGCAGCCAAAAACAAATTGGAAAAGCAAGTTGAAGAGCTGACATGGAGATTGCAACTGGAGAAGCGTATGAGGGCGGACTTGGAAGAAGCTAAAACACAAGAAAATGGAAAACTACAATCTGCTTTGCAAGACATGCAATGCAATTTAGAGAAACTAAAGCAATGCTGGACAAAGAAAGAGAAGCTGCTAAAAAAGCAGCTGAATCGCCTGCCATAA | 2877 | 40.7 | MATTGSPGVGSLVWLEDPEVAWIDGEVLEVNREDIKVLCTSGKTVVVTASSVYPKDAEVPPCGVDDMTRLAYLHEPGVLQNLRLRYDINEIYTYTGNILIAVNPFRRLPHLYDSHMMTQYKGAAFGELSPHPFAVADAAYRLMRNDGVSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQNGRISGAAVRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDIERYKLGNPRTFHYLNQSNCYDLDGVDDRKEYFETRRAMDIVGISSEEQDGIFRVVAAILHLGNVEFAKGKEADSSVPKDEKSRFHLKTAAELFMCDEKALEDSLCKRVIVTRDETITKCLDPTAAVLSRDALAKVVYSRLFDWLVDKINNSIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFTKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLNASNCSFVSRLFPPLAEESKSSKFSSIGTRFKQQLQSLLETLSSTEPHYIRCVKPNNLLKPAIFENQNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIDRFGLLAPEVLDRSSDEVTACKRLLEKVELQGFQVGKTKVFLRAGQMADLDGRRTEILGRSASIIQRKFRSYLSRRSFILLRKSALRIQAACRGHLSRQVYESMRREASSLMIQKNLRMYLHRKAYKDLYSSAVSIQTGMRGMTARNELRFRRQTKASIIIQSHCRKYLAQLHYRKEKKAAITTQCAWRGRCARKELKKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENGKLQSALQDMQCNLEKLKQCWTKKEKLLKKQLNRLP | 958 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 52807187 | 52814854 | + | Bda019423.2 | Bda04g00456 | 5478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda04g00456 | 958 | Pfam | IQ calmodulin-binding motif | 855 | 874 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Pfam | IQ calmodulin-binding motif | 758 | 777 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Pfam | IQ calmodulin-binding motif | 785 | 803 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Pfam | IQ calmodulin-binding motif | 736 | 754 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Pfam | IQ calmodulin-binding motif | 831 | 851 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | ProSiteProfiles | IQ motif profile. | 736 | 763 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SMART | iq_5 | 829 | 851 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SMART | iq_5 | 781 | 803 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SMART | iq_5 | 756 | 778 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SMART | iq_5 | 733 | 755 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SMART | iq_5 | 804 | 826 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | Gene3D | - | 785 | 831 | - | - | |
| Bda04g00456 | 958 | Gene3D | - | 734 | 784 | - | - | |
| Bda04g00456 | 958 | Gene3D | - | 832 | 881 | - | - | |
| Bda04g00456 | 958 | Gene3D | - | 666 | 728 | - | - | |
| Bda04g00456 | 958 | CDD | MYSc_Myo11 | 76 | 719 | IPR036018 | - | |
| Bda04g00456 | 958 | PANTHER | MYOSIN | 6 | 928 | - | - | |
| Bda04g00456 | 958 | SMART | MYSc_2a | 57 | 732 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | ProSiteProfiles | IQ motif profile. | 782 | 811 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Coils | Coil | 876 | 942 | - | - | |
| Bda04g00456 | 958 | ProSiteProfiles | IQ motif profile. | 853 | 882 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Pfam | Myosin N-terminal SH3-like domain | 10 | 52 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | Pfam | Myosin head (motor domain) | 64 | 719 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | ProSiteProfiles | IQ motif profile. | 830 | 859 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | PANTHER | MYOSIN-14 | 6 | 928 | - | - | |
| Bda04g00456 | 958 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 600 | - | - | |
| Bda04g00456 | 958 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | ProSiteProfiles | Myosin motor domain profile. | 62 | 731 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Bda04g00456 | 958 | Gene3D | - | 439 | 622 | - | - | |
| Bda04g00456 | 958 | ProSiteProfiles | IQ motif profile. | 757 | 786 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | Gene3D | Kinesin motor domain | 65 | 661 | IPR036961 | - | |
| Bda04g00456 | 958 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 786 | 882 | IPR027417 | - | |
| Bda04g00456 | 958 | Gene3D | - | 252 | 310 | - | - | |
| Bda04g00456 | 958 | ProSiteProfiles | IQ motif profile. | 805 | 834 | IPR000048 | GO:0005515 | |
| Bda04g00456 | 958 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 35 | 784 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00026 | Bda-Chr1:2928502 | Bda04g00456 | Bda-Chr4:52807187 | 7.36E-07 | dispersed | |
| Bda04g00456 | Bda-Chr4:52807187 | Bda13g00031 | Bda-Chr13:504384 | 0 | dispersed | |
| Bda04g00456 | Bda-Chr4:52807187 | Bda07g01187 | Bda-Chr7:14290412 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda04g00456 | K10357 | - | pvy:116142503 | 1660.2 |