Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00508 ATGGAAACAACCTCTATAAGATGTCTTCTCAACAGTATTTCTCGATTCATTCATCTGGTTTCTTCTCGGACAATAAAGTTCATATCTATCCAGGAAGATTACAAAGATATGGTTGGTGTATTAAAGCTATTGAAACCAGTACTTGATGATGTCGTTGATTATAAAATTATTTCAGATGATTTACTTTACAAAGAGTGTGAAGTATTGGATGTTGTGGTTAACGAGGCCCGAGAGTTTATGGAAAACTGGGGACCAAAGATGAGCAAAATTTGCAGTGTTTTGCAGAGTGATTCATTGTTGATGAAAATTCGAAATTTGTCGCTAGAAATTTGTCAGATACTCTGTAAATTGTTACAATCATCTCCATCTAGTTCAAGTTTAACAGCTGTTGAGCGATGCCTGCAAAGCCTTAAATTTTTCTCCAAGCAAGAAAGAGCATCTGAGTATATAAGAGAGGCTCTAAGAAGACAAAGAGATGATAATGGCCAAAGCACTGGAGATCTCGAAAGAATCATTGAACTTCTGTGTTTGAAATCGAGTCAGGAACTTTTGAAGGAGAGTATTGCTGTGGAAAAAGAGAGAATGAGTGCCAAAGTTAATGAAGCAAAGGGAGAAACAAGTCAAATGGACCAAATTGTGGCTTTTGTTGGCAGCATACGTGATTGGATGGCTAGAACTGATCAGTATCAGGGGATGATTAAGGTTCCAATTCCTCCATATTTCCGATGTTCTTTATCGTCGGAGTTGATGTTGGATCCTGTGATTGTGGCATCAGGTCAAACATATGATAGATATTCCATTCAAAAGTGGCTTGATAATGGACTAACCATATGCCCAAAAACTCATATGGTACTCTCTCATACCACCCTCACTCCTAATTATACTGTCAAGGCCATGATAGCAAATTGGTGTGAGGAAAATAATATAAATTTGCGTAACTTGGAGCGGAATTTCGTTTGTATCTCATCACCACCTATCGCTGTATCACAGCGAGATTCGATCCAGGCTGATAGTCATTTTTCTTTGACCAATAGTAATTTCACTGCACAATCGTCAACCGAAGTTGGAAATATCAATGAGAAGCAAACTGTAGGCATCTCCTCTCAATTGAGTGGAGAAAATTCCAAAGATGCCGCAGAGAAGAGCGACCACTCGTCACATGGGCAGTCATATGCACATAGTGGGAGTGGATCGGCTTCTAGTGGCATTTCGAGCATTGACTATGTTTCTTCTGCTCTGAATGAGGTATTGAGGATATCTAATACGGAGGATTATGTAAGCGAGCTATCTGGGGAAATCAAATCGGAGAATCCTACTGCTTATTCTCAACAGGAGTCAGGAATCTCTCGGCATTTAGTTGGAGAAAACTTGCAGAGCCGAAAAAAGGAAGTGGACATGGCAGAGAATGGAAAGGATAACTATAAGAGAGGCAGTTCCCTTCCAAATTTAACTTCTGCCCATGATGAGTTGACGACAACTTCCCATGTCAATGACTTGATTGTCGACCTCAAGAGCCAAAGGAAAGAAGTGCAAACTAATGCTGCCGAAGAATTACGGCTTCTAGCAAAGCACAATATGGAAAATCGTGTGATTATAGGAAAATGTGGAGCTATTGTGCCTTTACTTTCACTTTTATATTCAAAAGTGAAGTTAACACAGGAGCATGCTGTGACTGCTCTGTTAAATCTTTCCATTGATTTAAATAATAAGGCAATGATAGCTGATTCAGAAGCTATAGAACCACTTATTCATGTTCTGAAGACGGGAAATGACGTGGCCAAAGAGAATTCGGCAGCAGCTCTATTCAGCCTCTCCGTATTAGAAGAATACAAGGCCAAAATTGGTCGTTCTGATGCAGTTAGAGCTTTGGTGGATCTTCTGGGTTCGGGAAGTCTTAGAGGAAAGAAGGATGCTACAACTGCTCTTTTTAATTTGTCTATTTTTCATGAAAATAAGGCTCGAATTGTTCATGCCGGAGCGATAAGGTACCTTGTCGAGTTTTTAGACACGTCAACTGGGATGGTTGACAAGGCTGCTGCTCTGTTAGCTAATCTGTCAACCATTTCAGAAGGGCGTTTGGCAATTGCGCGAGAAGGGGGTATTCCATTGTTAGTTGAACTTGTTGACACTGGATCTCTTAGCGGTAAGGAAAATGCTGCCTCCATACTTTTACAGCTATGCCTTCATAGTTCAAAGTTTTGTACTTTGATTCTGCAAGAAGGTGCAGTTCCACCTCTGGTTGCCTTATCACAGTCCGGGACTCCTCGTTCGAAAGAAAAGGCACAACAGCTTCTCAGCCACTTTCGGAATCAGCGGGAAGGAGGATCTGGGAAAGGAAAATCGTGA 2346 40.79 METTSIRCLLNSISRFIHLVSSRTIKFISIQEDYKDMVGVLKLLKPVLDDVVDYKIISDDLLYKECEVLDVVVNEAREFMENWGPKMSKICSVLQSDSLLMKIRNLSLEICQILCKLLQSSPSSSSLTAVERCLQSLKFFSKQERASEYIREALRRQRDDNGQSTGDLERIIELLCLKSSQELLKESIAVEKERMSAKVNEAKGETSQMDQIVAFVGSIRDWMARTDQYQGMIKVPIPPYFRCSLSSELMLDPVIVASGQTYDRYSIQKWLDNGLTICPKTHMVLSHTTLTPNYTVKAMIANWCEENNINLRNLERNFVCISSPPIAVSQRDSIQADSHFSLTNSNFTAQSSTEVGNINEKQTVGISSQLSGENSKDAAEKSDHSSHGQSYAHSGSGSASSGISSIDYVSSALNEVLRISNTEDYVSELSGEIKSENPTAYSQQESGISRHLVGENLQSRKKEVDMAENGKDNYKRGSSLPNLTSAHDELTTTSHVNDLIVDLKSQRKEVQTNAAEELRLLAKHNMENRVIIGKCGAIVPLLSLLYSKVKLTQEHAVTALLNLSIDLNNKAMIADSEAIEPLIHVLKTGNDVAKENSAAALFSLSVLEEYKAKIGRSDAVRALVDLLGSGSLRGKKDATTALFNLSIFHENKARIVHAGAIRYLVEFLDTSTGMVDKAAALLANLSTISEGRLAIAREGGIPLLVELVDTGSLSGKENAASILLQLCLHSSKFCTLILQEGAVPPLVALSQSGTPRSKEKAQQLLSHFRNQREGGSGKGKS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 53669868 53672820 - Bda019481.1 Bda04g00508 5530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00508 781 Gene3D - 478 774 IPR011989 -
Bda04g00508 781 CDD RING-Ubox_PUB 241 282 IPR045210 -
Bda04g00508 781 MobiDBLite consensus disorder prediction 751 781 - -
Bda04g00508 781 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Bda04g00508 781 SUPERFAMILY ARM repeat 493 768 IPR016024 -
Bda04g00508 781 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Bda04g00508 781 Pfam Armadillo/beta-catenin-like repeat 527 564 IPR000225 GO:0005515
Bda04g00508 781 Pfam Armadillo/beta-catenin-like repeat 609 646 IPR000225 GO:0005515
Bda04g00508 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 317 IPR013083 -
Bda04g00508 781 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Bda04g00508 781 PANTHER U BOX DOMAIN-CONTAINING 7 776 - -
Bda04g00508 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 659 700 IPR000225 GO:0005515
Bda04g00508 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 618 660 IPR000225 GO:0005515
Bda04g00508 781 SMART arm_5 607 647 IPR000225 GO:0005515
Bda04g00508 781 SMART arm_5 525 565 IPR000225 GO:0005515
Bda04g00508 781 SMART arm_5 688 728 IPR000225 GO:0005515
Bda04g00508 781 SMART arm_5 566 606 IPR000225 GO:0005515
Bda04g00508 781 SMART arm_5 648 687 IPR000225 GO:0005515
Bda04g00508 781 MobiDBLite consensus disorder prediction 369 401 - -
Bda04g00508 781 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 7 776 - -
Bda04g00508 781 SUPERFAMILY RING/U-box 231 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00508 Bda-Chr4:53669868 Bda14g01265 Bda-Chr14:13332278 3.33E-143 dispersed
Bda04g00508 Bda-Chr4:53669868 Bda02g00903 Bda-Chr2:49352891 7.26E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00508 - - pvy:116109506 906.746