Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00526 ATGGAAGAGGTTGAGGAGGCTAACAAAGCAGCTGTTGAAAGCTGCCATAGATTATTAAGTCTATTTACTCAACCCCAAGATGAAGTACAGTACAGAAGTTTGATGGTGGAAACTGGGGAAACTATTTCTAAGTTTAAGAAAGTTGTATCTATTCTGAACATTGGTTTGGGCCATGCAAGAGCCAGAAAACTCAAGAAAATCCATACTCCTTTTCCTCAGACCATCTTTTTAGACAACCCTTATTCCAGATTAGAACATCAAAACAAAACCCTCCAGCTTGATTCTGTGCGCCTCGGAACCCCATCTTTGGAGTTGAGCTCAAATGGGAAAACTCCTCTTCAACTTTCTCAGCAAACACCCCCTTCCCACTATCACTTCCTTCATCAACAGCATCAACAGAGGTTGTTTCTACAGCAGCAGCAGATGAGTAATCAACAGGCAGAAATGATGTTTCGTAGGAGTAACAGTGCCTTAAACTTGAACTTTGATGGGTCTACTTGCACACCGACGATGTCATCGACGAGGTCCTTCATTTCTTCGCTGAGCGTTGATGGAAGTGTGGCCAATTTAGAAGGAAATGCCTTCCATTTGATTGGGGCTACTCGTTCTTTGGACCAGACATCTCAGCATAAGAGGAAGTGCTCTGCAAGGGGAGATGATGGGAGTGTTAAATGCGGAAGTAGTGGTAGATGCCACTGCTCCAAGAAGAGGAAACATAGGGTGAAAAGATCAGTTAAAGTTCCCGCCATTAGCAACAAGCTTGCTGATATTCCTCCTGATGATTATTCATGGAGAAAATACGGCCAGAAGCCCATTAAGGGTTCTCCTCACCCAAGGGGGTATTATAAGTGTAGCAGCATGAGAGGTTGCCCGGCAAGGAAGCACGTGGAAAGATGCTTAGAAGACCCGTCGATGCTCATAGTTACCTATGAAGGAGAGCATAACCACGCTAAGGTACCTGCTCAATCTGCAAATACTTGA 981 44.34 MEEVEEANKAAVESCHRLLSLFTQPQDEVQYRSLMVETGETISKFKKVVSILNIGLGHARARKLKKIHTPFPQTIFLDNPYSRLEHQNKTLQLDSVRLGTPSLELSSNGKTPLQLSQQTPPSHYHFLHQQHQQRLFLQQQQMSNQQAEMMFRRSNSALNLNFDGSTCTPTMSSTRSFISSLSVDGSVANLEGNAFHLIGATRSLDQTSQHKRKCSARGDDGSVKCGSSGRCHCSKKRKHRVKRSVKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHAKVPAQSANT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 53886332 53888003 - Bda019501.1 Bda04g00526 5548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00526 326 Pfam Plant zinc cluster domain 211 256 IPR018872 -
Bda04g00526 326 ProSiteProfiles WRKY domain profile. 253 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda04g00526 326 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 95 - -
Bda04g00526 326 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 106 326 - -
Bda04g00526 326 Pfam WRKY DNA -binding domain 260 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda04g00526 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 95 IPR044810 GO:0003700
Bda04g00526 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 106 326 IPR044810 GO:0003700
Bda04g00526 326 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda04g00526 326 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda04g00526 326 SUPERFAMILY WRKY DNA-binding domain 256 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00267 Bda-Chr4:32616742 Bda04g00526 Bda-Chr4:53886332 1.11E-59 dispersed
Bda04g00526 Bda-Chr4:53886332 Bda13g01302 Bda-Chr13:35252857 2.82E-51 dispersed
Bda04g00526 Bda-Chr4:53886332 Bda01g00700 Bda-Chr1:34258875 7.26E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15819 PF03106 WRKY 2.00E-26 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00526 - - pop:7476889 476.863