Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00536 ATGGAGAATAATCCGTACGAGGCCGCGACCGACGATTTCTTAGAGCAAATTCTTGGTATTCCTGCTTTCGCGCCGAATGAATCAGGCTTGGCAGGAAATGATGGTGGATTGTCAGGAGCTGTGGCTCAGGGTTCGATGAGGCTGCAGCTCAGCTCCGGGGACGGCTCTTGCCACACGGCCTGCGTTGGTGGAGGAAGCGATGGGGGAGCAGGGTTTCGTAGCCCTGGTTTTCCCTTGGGGTTGAGCTTGGAGCAGGGAAAGTGTGGGTATCTGAAGCCTGAGGAGGCATCCGGTAGCGGCCCGCGGTTCTGCGGCGAGGTTTTCCAAGGCCTACCAATTACCACCAATGTTAATGGAGCGCCACATCCTCCAGCAATGCGTCCAAGAGTTCGAGCTAGACGAGGACAAGCTACAGATCCCCATAGTATTGCTGAGAGGTTACGCAGGGAAAGAATTGCAGAGAGAGTCAGGGCATTGCAGGAACTGGTTCCTAGTGCAAACAAGACGGATAAAGCTGCCATGCTCGATGAAATAGTAGATTATGTGAAGTTCCTGCGACTCCAAGTGAAGGTTTTAAGCATAAGTAGACTGGGAGGTGCTGGGGCGGTAGCACCTCTTATAACAGACATTTCATTATTATCACTTGAGGAAAATGGAAGTGGAGGTGGAAGAAACCGACCCGCCTGGGAGAAGTGGTCAGATGATTGCACAGAAAGACAAGTTGCTAAGTTAATGCAAGAAAATGTTGGTGCTGCTATGCAATTTCTTCAATCCAAGGCCATTTGTCTCATGCCTATCTCTTTAGCCTCCTCAATCGACCACCCCCAGCCTGCTGACTCCGGCAGTGTGGTCAAGCTGGAGTCAAACCCACCTTACTAG 879 51.54 MENNPYEAATDDFLEQILGIPAFAPNESGLAGNDGGLSGAVAQGSMRLQLSSGDGSCHTACVGGGSDGGAGFRSPGFPLGLSLEQGKCGYLKPEEASGSGPRFCGEVFQGLPITTNVNGAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERVRALQELVPSANKTDKAAMLDEIVDYVKFLRLQVKVLSISRLGGAGAVAPLITDISLLSLEENGSGGGRNRPAWEKWSDDCTERQVAKLMQENVGAAMQFLQSKAICLMPISLASSIDHPQPADSGSVVKLESNPPY 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 53987459 53990610 - Bda019509.1 Bda04g00536 5558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00536 292 MobiDBLite consensus disorder prediction 118 140 - -
Bda04g00536 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Bda04g00536 292 PANTHER TRANSCRIPTION FACTOR UNE12 ISOFORM X1 7 276 - -
Bda04g00536 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 194 IPR036638 GO:0046983
Bda04g00536 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Bda04g00536 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 276 - -
Bda04g00536 292 SMART finulus 142 191 IPR011598 GO:0046983
Bda04g00536 292 Gene3D - 131 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01945 Bda-Chr1:55838157 Bda04g00536 Bda-Chr4:53987459 3.19E-60 dispersed
Bda04g00536 Bda-Chr4:53987459 Bda07g01202 Bda-Chr7:14414824 1.07E-86 dispersed
Bda10g00545 Bda-Chr10:39329297 Bda04g00536 Bda-Chr4:53987459 5.57E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15820 PF00010 HLH 5.40E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00536 - - csv:101218718 382.874