Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00536 | ATGGAGAATAATCCGTACGAGGCCGCGACCGACGATTTCTTAGAGCAAATTCTTGGTATTCCTGCTTTCGCGCCGAATGAATCAGGCTTGGCAGGAAATGATGGTGGATTGTCAGGAGCTGTGGCTCAGGGTTCGATGAGGCTGCAGCTCAGCTCCGGGGACGGCTCTTGCCACACGGCCTGCGTTGGTGGAGGAAGCGATGGGGGAGCAGGGTTTCGTAGCCCTGGTTTTCCCTTGGGGTTGAGCTTGGAGCAGGGAAAGTGTGGGTATCTGAAGCCTGAGGAGGCATCCGGTAGCGGCCCGCGGTTCTGCGGCGAGGTTTTCCAAGGCCTACCAATTACCACCAATGTTAATGGAGCGCCACATCCTCCAGCAATGCGTCCAAGAGTTCGAGCTAGACGAGGACAAGCTACAGATCCCCATAGTATTGCTGAGAGGTTACGCAGGGAAAGAATTGCAGAGAGAGTCAGGGCATTGCAGGAACTGGTTCCTAGTGCAAACAAGACGGATAAAGCTGCCATGCTCGATGAAATAGTAGATTATGTGAAGTTCCTGCGACTCCAAGTGAAGGTTTTAAGCATAAGTAGACTGGGAGGTGCTGGGGCGGTAGCACCTCTTATAACAGACATTTCATTATTATCACTTGAGGAAAATGGAAGTGGAGGTGGAAGAAACCGACCCGCCTGGGAGAAGTGGTCAGATGATTGCACAGAAAGACAAGTTGCTAAGTTAATGCAAGAAAATGTTGGTGCTGCTATGCAATTTCTTCAATCCAAGGCCATTTGTCTCATGCCTATCTCTTTAGCCTCCTCAATCGACCACCCCCAGCCTGCTGACTCCGGCAGTGTGGTCAAGCTGGAGTCAAACCCACCTTACTAG | 879 | 51.54 | MENNPYEAATDDFLEQILGIPAFAPNESGLAGNDGGLSGAVAQGSMRLQLSSGDGSCHTACVGGGSDGGAGFRSPGFPLGLSLEQGKCGYLKPEEASGSGPRFCGEVFQGLPITTNVNGAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERVRALQELVPSANKTDKAAMLDEIVDYVKFLRLQVKVLSISRLGGAGAVAPLITDISLLSLEENGSGGGRNRPAWEKWSDDCTERQVAKLMQENVGAAMQFLQSKAICLMPISLASSIDHPQPADSGSVVKLESNPPY | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 53987459 | 53990610 | - | Bda019509.1 | Bda04g00536 | 5558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00536 | 292 | MobiDBLite | consensus disorder prediction | 118 | 140 | - | - | |
Bda04g00536 | 292 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 136 | 185 | IPR011598 | GO:0046983 | |
Bda04g00536 | 292 | PANTHER | TRANSCRIPTION FACTOR UNE12 ISOFORM X1 | 7 | 276 | - | - | |
Bda04g00536 | 292 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 134 | 194 | IPR036638 | GO:0046983 | |
Bda04g00536 | 292 | Pfam | Helix-loop-helix DNA-binding domain | 141 | 185 | IPR011598 | GO:0046983 | |
Bda04g00536 | 292 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 276 | - | - | |
Bda04g00536 | 292 | SMART | finulus | 142 | 191 | IPR011598 | GO:0046983 | |
Bda04g00536 | 292 | Gene3D | - | 131 | 192 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01945 | Bda-Chr1:55838157 | Bda04g00536 | Bda-Chr4:53987459 | 3.19E-60 | dispersed | |
Bda04g00536 | Bda-Chr4:53987459 | Bda07g01202 | Bda-Chr7:14414824 | 1.07E-86 | dispersed | |
Bda10g00545 | Bda-Chr10:39329297 | Bda04g00536 | Bda-Chr4:53987459 | 5.57E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15820 | PF00010 | HLH | 5.40E-08 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00536 | - | - | csv:101218718 | 382.874 |