Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00544 AAGGATTTTCAGAACTTTGCTGCAGGAATGGATTCTATTAACATTAGAGGGGTTGGCGATATCGCCATATCTAAGAATTCCAATTACCAGGAAGCAAAGCCATCGGATTTGAAGGGGAATAATTTGGGGAGCATTAGTAATAAAGATATGGTTTTTCGAGCTGATATGATTGATTTTAAGAACTGGGATATTCAGCTGGAAAAGCACTTGAGCCGGGTTTGGTCGAGGGACAGAGAGGCTCCTGCAAAGAAGGAAGATTGGGAGATTGATTTGTCTAAAATGGATATAAGATATGTTTTAGCTCCTGGGACTTATGGAATTGTCTACAGAGGAGTTTATGATGGCCAAGATGTTGCAGTCAAAGTGTTGGATTGGGGGGAGGATGGCATTGCCACAGCTGCTGAAATTTCTGCTCTCCGGGCTTCGTTTCGGCAAGAAGTTGCTGTTTGGCATAAACTTGACCACCCTAATGTTGCAAAGTTTTATGGAGCTTCAATGGGAACTTCCAATCTGAAAATTCCTGCAAAAAGCACATCTAGCGATGGTCTTAACGCTTTTCCCTCGAGGGCTTGTTGCGTTGTAGTTGAATATCTTCCTGGAGGAACCCTAAAAAACTACTTGATAAGAAATAGGAGAAAGAAACTCGCATTTAAGGTCGTCATTCAACTCGCTTTGGATCTCTCAAGAGGTTTAAGCTATCTCCATTCGAAAAAGATAGTGCACAGAGACATAAAAACAGAAAATTTGTTGTTAGATGCTCATAGAACATTGAAAATTGTCGATTTTGGTGTGGCTCGTGTTGAAGCTCAGAATCCACAAGACATGACTGGAGAGACTGGCACTCTTGGCTACATGGCCCCAGAGGTTTTAGATGGTAAGCCTTACAATCGGAAATGCGACGTTTATAGCTTGGGAATATGCTTGTGGGAAACGTATTGTTGTGAGATGCCTTATCCCAACCATAGTTTCGCGGAAGTTTCGTCAGCGGTTGTCCGACAGAATTTACGGCCAGAGATACCGAGATGTTGTCCAAGTTCTTTGGCGAACATAATGAAAAAATGTTGGGATGCAAACCCGGAGAAACGACCCGAAATGGACGAAGTCGTGAAGTTGTTGGAAGCAGTCGATACGAGCAAGGGAGGCGGCATGATTCCCGACGATCAGGCATCCACCTGCTTCTGTTTCGGCATCCACCGAGGCCCT 1203 43.89 KDFQNFAAGMDSINIRGVGDIAISKNSNYQEAKPSDLKGNNLGSISNKDMVFRADMIDFKNWDIQLEKHLSRVWSRDREAPAKKEDWEIDLSKMDIRYVLAPGTYGIVYRGVYDGQDVAVKVLDWGEDGIATAAEISALRASFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPAKSTSSDGLNAFPSRACCVVVEYLPGGTLKNYLIRNRRKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENLLLDAHRTLKIVDFGVARVEAQNPQDMTGETGTLGYMAPEVLDGKPYNRKCDVYSLGICLWETYCCEMPYPNHSFAEVSSAVVRQNLRPEIPRCCPSSLANIMKKCWDANPEKRPEMDEVVKLLEAVDTSKGGGMIPDDQASTCFCFGIHRGP 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54136935 54139917 + Bda033580 Bda04g00544 5566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00544 401 CDD STKc_MAP3K-like 103 372 - -
Bda04g00544 401 Pfam Protein tyrosine and serine/threonine kinase 98 372 IPR001245 GO:0004672|GO:0006468
Bda04g00544 401 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 14 394 - -
Bda04g00544 401 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 14 394 - -
Bda04g00544 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Bda04g00544 401 Gene3D Transferase(Phosphotransferase) domain 1 198 384 - -
Bda04g00544 401 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00544 401 PRINTS Tyrosine kinase catalytic domain signature 233 251 IPR001245 GO:0004672|GO:0006468
Bda04g00544 401 PRINTS Tyrosine kinase catalytic domain signature 195 208 IPR001245 GO:0004672|GO:0006468
Bda04g00544 401 PRINTS Tyrosine kinase catalytic domain signature 299 321 IPR001245 GO:0004672|GO:0006468
Bda04g00544 401 PRINTS Tyrosine kinase catalytic domain signature 343 365 IPR001245 GO:0004672|GO:0006468
Bda04g00544 401 SUPERFAMILY Protein kinase-like (PK-like) 76 372 IPR011009 -
Bda04g00544 401 SMART serkin_6 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00544 401 Gene3D Phosphorylase Kinase; domain 1 82 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01271 Bda-Chr1:48131650 Bda04g00544 Bda-Chr4:54136935 2.91E-82 dispersed
Bda04g00544 Bda-Chr4:54136935 Bda13g00107 Bda-Chr13:1484747 7.46E-160 dispersed
Bda04g00544 Bda-Chr4:54136935 Bda13g01658 Bda-Chr13:40027030 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69597 PF07714 PK_Tyr_Ser-Thr 8.30E-57 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00544 - - mcha:111018484 672.159