Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00578 ATGAACATCACTACCAGAGCGGAGTTCGAGAAGATCGTTCCTAAGGGGGTCCTCGATAACGTCGTTGCGAATTGCAACCAATCTCTTGAGAATAGTTCTCCTTGTGCTTCCTGTACAACGAGTTTGTCTATCTTGCAGGCATCGTATTTGACGGGATCATCAGTCGGCAACGTATCAGATTGCACTGCGTATCCGTTCATATACGCTGCCGCCTTCGCCAATCCATTTGGTCCTGCCGACAGTGGGACGGCCAAATGCTTGTTCTCCTTGGATTTTTCATCCTCCGAGTCGAAAGACAAGAGGCGGAAGGTGATGATTTTAGGGATGTCCATTGGCTGTGGACTTGGGATCCTAATAGTGATTCTGGGGAGCTGGTTTTCATGGCGGAATATGAGGGCATGGAGGAAGGAAAGGAGAAGGAGGGACGAAATACAGAGAGTAGAGACGAGTTTAGCCTCTGGATTGGAATCAATTGGTGACAGCACAACTCTGGTGAGATTCACCTACGAAGAAATCAAGAAAGCAACGAAGAATTTCTCCAGGGACTGTATAATCGGAAAAGGAGGGTATGGTAATGTCTACAAGGGCGTGTTGGAAGACGGCTCAGAAGTAGCCATGAAGAGGTTCAAGAATTGCTCGGCTGCAGGCGATGCCAATTTCGCCCACGAAGTGGAGGTCATTGCCAGCATTCGGCACATAAACCTCGTTAGCTTAAGAGGATATTGCATAGCCACCACTCCTTTCGAGGGCCACCAACGGATAATCGTATGCGATCTGATGAAAAATGGCAGTCTACACGATCATTTATTCGGCCGATTCGATGATAAACTATCTTGGCCAGTCCGACAAAACATTGCCCTCGGGACAGCGAGAGGACTAGCCTATCTGCACTACGGAGCTCAACCGGCCATAATTCACAGAGATATCAAGGCAAGCAATATACTCTTGGACGAAAATTTCGAGCCAAAAGTTGCAGATTTCGGGCTGGCCAAGTTCACGCCAGAGGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACCATGGGCTATGTGGCTCCCGAATATGCTCTATATGGTCAATTAACCGAGAGAAGCGATGTGTACAGCTTTGGAGTGTCACTTCTCGAGCTATTCAGCGGGAGAAAGGCACTCACCGTGAATAGTGACAATCAGCCGAGCTTGGTGACCGACTGGGCCTGGACACTGGTGAGGGAAGGAAGAACTCTCGATGTGATCGAAGATGGAATTCCAGATTTAGGCCCTCCCGACGCAATCGAGAAGTACATATTAATCGCAGTCCTTTGCTCTCACCCTCAGTTATATGCAAGGCCAACTATGGATCAGGTTGTGAAAATGTTGGAAACGGATTTATCAGTTCCTTCGATTCCGGAGAGGCCTATTCCGATTGTGGCTCATATCGATGATATTGAGAGATCTATGAGTAGCGAAGGATCTCTTCATCTCCCCCCCGAGCTCCGCTAG 1482 48.45 MNITTRAEFEKIVPKGVLDNVVANCNQSLENSSPCASCTTSLSILQASYLTGSSVGNVSDCTAYPFIYAAAFANPFGPADSGTAKCLFSLDFSSSESKDKRRKVMILGMSIGCGLGILIVILGSWFSWRNMRAWRKERRRRDEIQRVETSLASGLESIGDSTTLVRFTYEEIKKATKNFSRDCIIGKGGYGNVYKGVLEDGSEVAMKRFKNCSAAGDANFAHEVEVIASIRHINLVSLRGYCIATTPFEGHQRIIVCDLMKNGSLHDHLFGRFDDKLSWPVRQNIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVSLLELFSGRKALTVNSDNQPSLVTDWAWTLVREGRTLDVIEDGIPDLGPPDAIEKYILIAVLCSHPQLYARPTMDQVVKMLETDLSVPSIPERPIPIVAHIDDIERSMSSEGSLHLPPELR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54459367 54460848 - Bda019549.1 Bda04g00578 5600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00578 493 CDD STKc_IRAK 185 454 - -
Bda04g00578 493 ProSiteProfiles Protein kinase domain profile. 179 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00578 493 SMART serkin_6 179 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00578 493 Gene3D Phosphorylase Kinase; domain 1 141 258 - -
Bda04g00578 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Bda04g00578 493 Pfam SPARK 1 58 IPR043891 -
Bda04g00578 493 Pfam Protein kinase domain 182 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00578 493 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 1 488 - -
Bda04g00578 493 SUPERFAMILY Protein kinase-like (PK-like) 158 454 IPR011009 -
Bda04g00578 493 Gene3D Transferase(Phosphotransferase) domain 1 260 460 - -
Bda04g00578 493 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Bda04g00578 493 PANTHER OS01G0750732 PROTEIN 1 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00578 Bda-Chr4:54459367 Bda10g00777 Bda-Chr10:42197785 2.13E-84 dispersed
Bda04g00578 Bda-Chr4:54459367 Bda01g02061 Bda-Chr1:56840481 4.39E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69599 PF00069 Pkinase 4.80E-41 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00578 - - jre:109010942 742.265