Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00601 ATGAAGAAAACAGTAAAACATGAGGAAGAGGACGCTACATATAGTAAGAAGCTACAGTGCAATGGAGGGAACAGCGACGTGTCTGCGTTTTACAGGGCTCCAGAGGATCAAGCTTTGCACATGGAGAAAGATCAGTCGGACAGACAAGGATTTAAGTACGATTTTGCAGGCGGAAGCAGCGCATCAAGCGAAGATGGTGTCGTTAAAGATCAAGATCGGTTGCTTCCTATCGCTAATGTCGGCAGGATCATGAAACAGATTTTGCCTAACAATGCCAAAGTCTCTAAAGAAGCTAAGGAAACTATGCAAGAATGCGTGTCCGAGTTCATAAGCTTCGTCACCGGAGAAGCCTCCGATAAGTGCAGGCTAGAGAAGAGGAAGACGCTCAACGGCGACGATATTTGCTCTGCTATGGAGCTTCTGGGATTTGACGATTATGCTCAGCCATTGAAGAGGTATTTACTCAAGTATAGAGAGGTGGAGGAGGAGAGAGCTAAAAGTAAGATTGAAAATGAAGAAGAAGAAGAATATAAGAGCTAG 540 44.63 MKKTVKHEEEDATYSKKLQCNGGNSDVSAFYRAPEDQALHMEKDQSDRQGFKYDFAGGSSASSEDGVVKDQDRLLPIANVGRIMKQILPNNAKVSKEAKETMQECVSEFISFVTGEASDKCRLEKRKTLNGDDICSAMELLGFDDYAQPLKRYLLKYREVEEERAKSKIENEEEEEYKS 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54650518 54651057 + Bda019572.1 Bda04g00601 5623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00601 179 ProSitePatterns NF-YB/HAP3 subunit signature. 105 121 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda04g00601 179 SUPERFAMILY Histone-fold 71 168 IPR009072 GO:0046982
Bda04g00601 179 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Bda04g00601 179 PRINTS CCAAT-binding transcription factor subunit A signature 140 158 - -
Bda04g00601 179 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Bda04g00601 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 52 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda04g00601 179 MobiDBLite consensus disorder prediction 41 67 - -
Bda04g00601 179 Coils Coil 150 177 - -
Bda04g00601 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 138 IPR003958 -
Bda04g00601 179 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Bda04g00601 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 52 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00601 Bda-Chr4:54650518 Bda14g01019 Bda-Chr14:8589455 2.76E-48 dispersed
Bda12g00414 Bda-Chr12:5010035 Bda04g00601 Bda-Chr4:54650518 2.19E-41 dispersed
Bda04g00601 Bda-Chr4:54650518 Bda12g00962 Bda-Chr12:40824349 4.08E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15824 PF00808 CBFD_NFYB_HMF 9.80E-26 CL0012 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00601 K08065 - qsu:112003935 194.126