Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00601 ATGAAGAAAACAGTAAAACATGAGGAAGAGGACGCTACATATAGTAAGAAGCTACAGTGCAATGGAGGGAACAGCGACGTGTCTGCGTTTTACAGGGCTCCAGAGGATCAAGCTTTGCACATGGAGAAAGATCAGTCGGACAGACAAGGATTTAAGTACGATTTTGCAGGCGGAAGCAGCGCATCAAGCGAAGATGGTGTCGTTAAAGATCAAGATCGGTTGCTTCCTATCGCTAATGTCGGCAGGATCATGAAACAGATTTTGCCTAACAATGCCAAAGTCTCTAAAGAAGCTAAGGAAACTATGCAAGAATGCGTGTCCGAGTTCATAAGCTTCGTCACCGGAGAAGCCTCCGATAAGTGCAGGCTAGAGAAGAGGAAGACGCTCAACGGCGACGATATTTGCTCTGCTATGGAGCTTCTGGGATTTGACGATTATGCTCAGCCATTGAAGAGGTATTTACTCAAGTATAGAGAGGTGGAGGAGGAGAGAGCTAAAAGTAAGATTGAAAATGAAGAAGAAGAAGAATATAAGAGCTAG 540 44.63 MKKTVKHEEEDATYSKKLQCNGGNSDVSAFYRAPEDQALHMEKDQSDRQGFKYDFAGGSSASSEDGVVKDQDRLLPIANVGRIMKQILPNNAKVSKEAKETMQECVSEFISFVTGEASDKCRLEKRKTLNGDDICSAMELLGFDDYAQPLKRYLLKYREVEEERAKSKIENEEEEEYKS 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54650518 54651057 + Bda019572.1 Bda04g00601 5623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00601 179 ProSitePatterns NF-YB/HAP3 subunit signature. 105 121 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda04g00601 179 SUPERFAMILY Histone-fold 71 168 IPR009072 GO:0046982
Bda04g00601 179 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Bda04g00601 179 PRINTS CCAAT-binding transcription factor subunit A signature 140 158 - -
Bda04g00601 179 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Bda04g00601 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 52 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda04g00601 179 MobiDBLite consensus disorder prediction 41 67 - -
Bda04g00601 179 Coils Coil 150 177 - -
Bda04g00601 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 138 IPR003958 -
Bda04g00601 179 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Bda04g00601 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 52 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00601 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - qsu:112003935 194.126
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00601 Bda-Chr4:54650518 Bda14g01019 Bda-Chr14:8589455 2.76E-48 dispersed
Bda12g00414 Bda-Chr12:5010035 Bda04g00601 Bda-Chr4:54650518 2.19E-41 dispersed
Bda04g00601 Bda-Chr4:54650518 Bda12g00962 Bda-Chr12:40824349 4.08E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g243 Blo05g00317 . Bda04g00601 . . Bpe06g00510 . . . Cmo17g01087 . . . . . . . . . . . . . . Cla09g00572 Cam09g0608 Cec09g0592 Cco09g0586 Clacu09g0607 . Cre09g0581 Cone17ag0499 Cone20ag0927 . . Lsi02g02373 . . Cme01g02349 . . . . . . . . . . . . Cma17g01111 . . . Cpe12g00955 . . . . . . . . . . . . . . . . Chy01g01662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda05g00681 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 90.0 1.2e-42 170.2
Bda13g00590 . 7 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.3 4.3e-37 151.8
Bda06g00410 . 21 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 5.6e-37 151.4
Bda05g00681 . 1 128 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.2 5.9e-42 167.9
Bda06g00410 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.8 1.5e-57 219.2
Bda12g00962 CCT 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 4.8e-56 214.2
Bda13g00590 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.7 1.4e-55 212.6
Bda07g00410 CCT 1 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 7.5e-49 190.3
Bda14g00336 BCT,CCT,ECH 13 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.2 4.2e-44 174.5
Bda15g00184 CCT,ECH 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.5e-44 173.3
Bda14g01019 . 21 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.5 3.6e-43 171.4
Bda03g00753 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.7e-43 171.0
Bda15g00376 BCT,CCT,ECH 11 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.3 6.1e-43 170.6
Bda08g00966 . 9 100 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.9 1.5e-41 166.0
Bda15g00184 CCT,ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.3e-50 196.1
Bda14g00336 BCT,CCT,ECH 3 119 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.2 8.4e-50 193.4
Bda03g00753 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.4e-49 190.7
Bda15g00376 BCT,CCT,ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.2 2.7e-48 188.3
Bda12g00962 CCT 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.0 4.5e-43 171.0
Bda06g00410 . 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 7.6e-43 170.2
Bda13g00590 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 1.7e-42 169.1
Bda07g00410 CCT 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.9e-42 167.5
Bda14g01019 . 9 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.3 9.3e-41 163.3
Bda08g00966 . 9 98 CCAAT-HAP3 Transcription Factor Family AT2G38880 75.6 1.5e-38 156.0
Bda04g00601 . 67 164 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.6 1.1e-39 159.8
Bda07g00410 CCT 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.3e-39 157.5
Bda12g00962 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 5.3e-39 157.5
Bda06g00410 . 21 125 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.8 4.5e-38 154.5
Bda13g00590 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.9e-38 154.1
Bda14g01019 . 22 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.7 8.5e-37 150.2
Bda15g00184 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.1 4.4e-55 211.1
Bda15g00376 BCT,CCT,ECH 7 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 1.7e-54 209.1
Bda03g00753 . 1 139 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 1.4e-53 206.1
Bda14g00336 BCT,CCT,ECH 13 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 85.2 6.1e-49 190.7
Bda06g00410 . 6 124 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.8 4.9e-46 181.0
Bda07g00410 CCT 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.5 1.1e-45 179.9
Bda13g00590 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 4.1e-45 177.9
Bda12g00962 CCT 17 143 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.4 3.5e-44 174.9
Bda14g01019 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.5 9.8e-39 156.8
Bda08g00966 . 1 97 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 6.4e-38 154.1
Bda06g00410 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 6.0e-46 181.0
Bda08g00966 . 9 106 CCAAT-HAP3 Transcription Factor Family AT2G13570 88.8 1.8e-45 179.5
Bda13g00590 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 3.0e-45 178.7
Bda14g01019 . 3 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.3 1.1e-44 176.8
Bda07g00410 CCT 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.3e-43 173.3
Bda12g00962 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 1.1e-42 170.2
Bda03g00753 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.7e-40 162.9
Bda15g00376 BCT,CCT,ECH 26 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.3 2.9e-40 162.2
Bda14g00336 BCT,CCT,ECH 28 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.8 6.5e-40 161.0
Bda15g00184 CCT,ECH 26 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.0 1.4e-39 159.8
Bda04g00601 . 69 167 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.7 6.7e-37 151.0
Bda12g00962 CCT 1 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 5.0e-52 201.1
Bda06g00410 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 2.1e-50 195.7
Bda13g00590 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 6.1e-50 194.1
Bda07g00410 CCT 1 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.7 4.4e-48 188.0
Bda15g00184 CCT,ECH 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.7 8.5e-44 173.7
Bda14g00336 BCT,CCT,ECH 28 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 83.2 7.2e-43 170.6
Bda03g00753 . 19 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 9.4e-43 170.2
Bda15g00376 BCT,CCT,ECH 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 3.6e-42 168.3
Bda14g01019 . 17 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.0 1.4e-41 166.4
Bda08g00966 . 9 103 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.0 5.7e-40 161.0
Bda15g00184 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.3 1.0e-54 209.9
Bda03g00753 . 16 134 CCAAT-HAP3 Transcription Factor Family AT3G53340 86.2 1.7e-54 209.1
Bda15g00376 BCT,CCT,ECH 12 134 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.2 4.2e-53 204.5
Bda14g00336 BCT,CCT,ECH 3 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.7 2.8e-49 191.8
Bda06g00410 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 5.5e-45 177.6
Bda13g00590 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 7.2e-45 177.2
Bda07g00410 CCT 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 2.7e-44 175.3
Bda12g00962 CCT 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.9 1.1e-42 169.9
Bda14g01019 . 22 114 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.5 5.9e-39 157.5
Bda08g00966 . 9 97 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 4.2e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15824 PF00808 CBFD_NFYB_HMF 9.80E-26 CL0012 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00601 Bda_Chr04 FPKM 31.768328 35.50037 16.36072 20.176872 3.289862 4.078407 3.236537 0.0 0.0