Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00624 ATGGCTTCCAAATCCCACCAACTTTTTTTGGCGGCGACTCCATTTTTATTTCTTCTTTTAGTTTCTGCAGATGTTCCCCCGACTACTCCGGTGACTACTGGTTCCATTTGCGGGTCGACCAAAGATCCTTCCTTTTGCAAAGACGTGCTCCCCAATGGAACCGGAAATGTCTACGATTTCTGCCGGTTTTCGGTTCGGAAGTCACTGACGCAGTCGAGAAAGTTCCTGAGCTTAGTAAATAAGTATCTCCGTCAACGGTCTTCCTTAACGTTGACCGCCATTAGAGCTCTCGAAGATTGCCGGTTTCTCGCAGAGTTAAACATGGATTATTTATTGACCTCATTCCAAACTGTGAACGCTTCCGGCGTAACTCTTCCGGAAATGCAAGCTGATTACTTACAGACTTTGCTCAGCGGATGCTTGACTAATCAACAGACCTGTTTAGAAGGTTTACAATCGACTGCTTCGGCTTGGAGTTTGAGAAATGGACTCTCTCTCCCTCTCGCTAATGATACTAAGCTCTACAGTGTTTCGTTAGCTCTGTTTACCAGAGGGTGGGTGTCGAAGAAGAAGAAGAAAAGCTCGTCTTCGTGGATCCCGTCCAGGAAGCATCTGAGGTTCAGAAAGGGGCACCTGCCGATGAAAATGTCGGCCCGAACTCAGGCGATTTACGAGAAATTCACCCGGAGGAACCTGCTGCAGACGGATGGCGACGAAGGCAATGATTCGGTTACACTTGCTGATATGGTGGTGGTTAGCCAAGATGGGAGTGGAAACTTCACCACCATTAACGACGCCATTGCTGCAGCTCCGAATAACTCAGTCGTCAACGACGGGTATCATTTGATATACGTCACAACCGGCGTTTACGAAGAGTACGTTTCCATTGCGAAAAATAAACGGTATTTGATGATTGTCGGAGATGGTATAAATCAGACGATTATCACCGGTAATAGAAGCGTCGTCGATGGGTGGACTGAACCAGGGGAAGCTGAAGAAGATTTTGGCTCTATCCCTACGACAGATCTGTTCAAGAAAATGCTGTTGTCTCGCAGCGCTCGACCGCCAATTATACCGAAAGAAATTGGATTCAGAGGGCTTCCTACTCCAGATTCTCTTCCTTCTTGGTTATCCGAAGACGATATCAATTATTTCGCCGGAAAATATAACAAGTCGGGCTTCACCGGAGGATTGAACTACTACCGCGCATTGGATCTAACCTGGGAGCTCACAGCTCCTTGGACCGGTGCTCAAATCAAAGTGCCGGCTAAATTCATCATCGGCGACCAGGATCTGACATACTATTTTCCGGGGGTGAAGGACTACATTCACAATGGAGGATTCAAAAAAGACGTTCCGAATCTGGAACAAGTCGTCGTAATCGAAGGCGCAGCCCACTTCATCAACCAAGAGAAGCCAGAGGAAATCAGCTCCCACATTTATGAATTCATCAAGAACTTTTAA 1464 46.93 MASKSHQLFLAATPFLFLLLVSADVPPTTPVTTGSICGSTKDPSFCKDVLPNGTGNVYDFCRFSVRKSLTQSRKFLSLVNKYLRQRSSLTLTAIRALEDCRFLAELNMDYLLTSFQTVNASGVTLPEMQADYLQTLLSGCLTNQQTCLEGLQSTASAWSLRNGLSLPLANDTKLYSVSLALFTRGWVSKKKKKSSSSWIPSRKHLRFRKGHLPMKMSARTQAIYEKFTRRNLLQTDGDEGNDSVTLADMVVVSQDGSGNFTTINDAIAAAPNNSVVNDGYHLIYVTTGVYEEYVSIAKNKRYLMIVGDGINQTIITGNRSVVDGWTEPGEAEEDFGSIPTTDLFKKMLLSRSARPPIIPKEIGFRGLPTPDSLPSWLSEDDINYFAGKYNKSGFTGGLNYYRALDLTWELTAPWTGAQIKVPAKFIIGDQDLTYYFPGVKDYIHNGGFKKDVPNLEQVVVIEGAAHFINQEKPEEISSHIYEFIKNF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54818420 54827830 - Bda019591.1 Bda04g00624 5646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00624 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 184 IPR035513 -
Bda04g00624 487 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Bda04g00624 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 184 IPR035513 -
Bda04g00624 487 PANTHER PECTINESTERASE 16 326 - -
Bda04g00624 487 SMART PMEI_2 26 181 IPR006501 GO:0004857
Bda04g00624 487 PRINTS Epoxide hydrolase signature 421 437 IPR000639 GO:0003824
Bda04g00624 487 PRINTS Epoxide hydrolase signature 461 483 IPR000639 GO:0003824
Bda04g00624 487 CDD PMEI-like_3 35 186 - -
Bda04g00624 487 Gene3D alpha/beta hydrolase 303 487 IPR029058 -
Bda04g00624 487 SUPERFAMILY Pectin lyase-like 245 329 IPR011050 -
Bda04g00624 487 Pfam Pectinesterase 250 326 IPR000070 GO:0030599|GO:0042545
Bda04g00624 487 PANTHER PECTINESTERASE 16 326 - -
Bda04g00624 487 SUPERFAMILY alpha/beta-Hydrolases 371 486 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00624 Bda-Chr4:54818420 Bda13g00196 Bda-Chr13:2433821 8.53E-58 dispersed
Bda13g00786 Bda-Chr13:9349119 Bda04g00624 Bda-Chr4:54818420 3.96E-20 dispersed
Bda04g00623 Bda-Chr4:54815533 Bda04g00624 Bda-Chr4:54818420 7.88E-112 tandem
Bda10g00629 Bda-Chr10:40316479 Bda04g00624 Bda-Chr4:54818420 6.83E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00624 K01051 - cit:102613865 404.831