Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00635 ATGGAGAATGGTTCACTGGTACTGGCTCATAGTCCTCCTTCAACCCCTCTCCGTAAGATTATTATGGTCTCTGCCATCGCTGCTGGTGTTCAATTTGGATGGGCTCTCCAGCTCTCGCTCTTAACTCCATACGTTCAGCAATTAGGAGTTTCCCGCATTTGGACCTCATTCATCTGGCTCTGCGGTCCAATTTCTGGTTTATTAGTTCAGCCTATCGTTGGCTACTACAGTGATCGGAGCACTTCCCGGATAGGTCGTCGCCGCCCGTTCATTATTGGCGGCGCGTTCTTCGTCGCCCTCTCTGTTTTCCTTATTGGCTTTGCTGCCGACATCGGTCATGCTCTTGGCGACGATCTATCTAAGTCCATGAAGCCGCGCGCCGTCGCCATTTTCGTTGATGGTTTTTGGATCCTCGACGTTGCTAACAATATGTTGCAAGGACCATGTAGAGCTTTTCTGGCTGATCTTTCAGGTAACGACCACGGGAAAATGAGCCTCTCTAATGGCTTATTCGCTTTCTTCATGGCCGCCGGAAATTTTTTGGGTTATGGTGCTGGTTCATATGGAGGCCTCCACAAGTTCCTCCCCTTCACCGAGGCAAAAGCCTGCGACGTTAACTGTGCGAATCTAAAAACGTGCTTCATCATCGAAATCCTCCTCCTCGTCATCGTGACAGTGTTCGCCGTTTCAACGGTGAGCGAGATTCCGTTCGTTAAGAAAAAGGACAACGAGGAATCAGAAGTGTTCTTCAAACAATTGTGTGGGGCGTTGAAGCAGCTTTCTAGACCCATGTGGATTCTCTTCCTCGTGACTGCTTTCAACTGGATCGCTTGGTTCTCATTCCTGTTGTATGACACGGACTGGATGGGTTTGGACGTGTACGGAGGAAAGCCGACGGGGACGGCGCAAGAAGTGAGGATTTATGATATGGGTGTGCGAGCTGGGGCTCTAGGTTTGGTGATTAACTCCATTGTTTTGGGTTTCGCATCGCTCGCCGTGGAGCCCATTAGTCGAGGTTTGAAGGGTGCGAAGAACTGGTGGGGATTTGTTAACTTAATCCTAATTATCGTGTCGATGGTGAGCCGTCCACTAGATGCAGCGTTCGGGGGTGGAAACTCAGCGACATTTGTGATGGGCGGCATAGCAGCGGCAGTAAGTGCAGTGGCACTGACGATTCTTCCGAAAACAGGGAGGCAATCCAGCTCCTCCTTGACCATGGGAGGACATTAA 1230 50.41 MENGSLVLAHSPPSTPLRKIIMVSAIAAGVQFGWALQLSLLTPYVQQLGVSRIWTSFIWLCGPISGLLVQPIVGYYSDRSTSRIGRRRPFIIGGAFFVALSVFLIGFAADIGHALGDDLSKSMKPRAVAIFVDGFWILDVANNMLQGPCRAFLADLSGNDHGKMSLSNGLFAFFMAAGNFLGYGAGSYGGLHKFLPFTEAKACDVNCANLKTCFIIEILLLVIVTVFAVSTVSEIPFVKKKDNEESEVFFKQLCGALKQLSRPMWILFLVTAFNWIAWFSFLLYDTDWMGLDVYGGKPTGTAQEVRIYDMGVRAGALGLVINSIVLGFASLAVEPISRGLKGAKNWWGFVNLILIIVSMVSRPLDAAFGGGNSATFVMGGIAAAVSAVALTILPKTGRQSSSSLTMGGH 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54979385 54981133 - Bda019606.1 Bda04g00635 5657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00635 409 CDD MFS_SLC45_SUC 20 357 - -
Bda04g00635 409 Pfam MFS/sugar transport protein 32 277 - -
Bda04g00635 409 Gene3D MFS general substrate transporter like domains 17 240 IPR036259 -
Bda04g00635 409 SUPERFAMILY MFS general substrate transporter 19 402 IPR036259 -
Bda04g00635 409 TIGRFAM GPH_sucrose: sucrose/H+ symporter 16 356 IPR005989 GO:0005887|GO:0008515|GO:0015770
Bda04g00635 409 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 13 356 - -
Bda04g00635 409 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 355 399 - -
Bda04g00635 409 PANTHER SUGAR TRANSPORTER 355 399 - -
Bda04g00635 409 PANTHER SUGAR TRANSPORTER 13 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00635 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 494.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00635 Bda-Chr4:54979385 Bda07g00816 Bda-Chr7:9639230 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01439 BCT 17 492 Sucrose Transporter Gene Family AT1G22710 64.7 2.1e-177 619.0
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-176 614.4
Bda07g00816 . 17 450 Sucrose Transporter Gene Family AT1G22710 58.7 1.8e-144 509.6
Bda11g00815 BCT 28 464 Sucrose Transporter Gene Family AT1G22710 50.9 1.4e-136 483.4
Bda04g00635 . 17 409 Sucrose Transporter Gene Family AT1G22710 51.0 2.6e-124 442.6
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT2G14670 62.8 1.9e-172 602.4
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT2G14670 61.5 9.9e-169 590.1
Bda07g00816 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.1 3.2e-143 505.4
Bda11g00815 BCT 13 464 Sucrose Transporter Gene Family AT2G14670 50.9 6.5e-136 481.1
Bda13g01439 BCT 10 400 Sucrose Transporter Gene Family AT1G66570 61.8 1.9e-142 502.7
Bda13g01438 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.6 1.6e-141 499.6
Bda07g00816 . 15 406 Sucrose Transporter Gene Family AT1G66570 61.2 1.8e-140 496.1
Bda04g00635 . 15 356 Sucrose Transporter Gene Family AT1G66570 61.2 2.9e-122 435.6
Bda11g00815 BCT 24 414 Sucrose Transporter Gene Family AT1G66570 51.5 7.6e-115 411.0
Bda01g02166 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 3.2e-185 644.8
Bda13g01439 BCT 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.9e-160 562.0
Bda13g01438 . 18 489 Sucrose Transporter Gene Family AT5G06170 60.3 1.7e-157 552.7
Bda07g00816 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.6 1.2e-134 476.9
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT5G43610 62.0 9.9e-169 590.1
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT5G43610 60.6 1.3e-165 579.7
Bda07g00816 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 1.1e-140 496.9
Bda11g00815 BCT 22 464 Sucrose Transporter Gene Family AT5G43610 50.4 5.7e-132 468.0
Bda04g00635 . 16 356 Sucrose Transporter Gene Family AT5G43610 60.2 2.9e-120 429.1
Bda11g00815 BCT 23 470 Sucrose Transporter Gene Family AT1G09960 70.6 6.0e-193 670.6
Bda13g01439 BCT 12 482 Sucrose Transporter Gene Family AT1G09960 52.6 1.6e-137 486.5
Bda04g00635 . 11 356 Sucrose Transporter Gene Family AT1G09960 50.4 2.2e-99 359.8
Bda13g01439 BCT 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.9e-170 595.9
Bda13g01438 . 13 503 Sucrose Transporter Gene Family AT1G71880 60.8 2.4e-170 595.5
Bda07g00816 . 10 450 Sucrose Transporter Gene Family AT1G71880 56.3 7.7e-140 494.2
Bda11g00815 BCT 27 464 Sucrose Transporter Gene Family AT1G71880 51.8 1.3e-131 466.8
Bda13g01439 BCT 10 492 Sucrose Transporter Gene Family AT1G71890 59.3 1.8e-165 579.3
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G71890 58.0 1.4e-162 569.7
Bda07g00816 . 15 450 Sucrose Transporter Gene Family AT1G71890 54.9 6.7e-136 481.1
Bda04g00635 . 15 394 Sucrose Transporter Gene Family AT1G71890 50.2 2.5e-122 436.0
Bda13g01439 BCT 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.9e-170 595.9
Bda13g01438 . 13 503 Sucrose Transporter Gene Family AT1G71880 60.8 2.4e-170 595.5
Bda07g00816 . 10 450 Sucrose Transporter Gene Family AT1G71880 56.3 7.7e-140 494.2
Bda11g00815 BCT 27 464 Sucrose Transporter Gene Family AT1G71880 51.8 1.3e-131 466.8
Bda13g01439 BCT 17 492 Sucrose Transporter Gene Family AT1G22710 64.7 2.1e-177 619.0
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-176 614.4
Bda07g00816 . 17 450 Sucrose Transporter Gene Family AT1G22710 58.7 1.8e-144 509.6
Bda11g00815 BCT 28 464 Sucrose Transporter Gene Family AT1G22710 50.9 1.4e-136 483.4
Bda04g00635 . 17 409 Sucrose Transporter Gene Family AT1G22710 51.0 2.6e-124 442.6
Bda01g02166 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 3.2e-185 644.8
Bda11g00815 BCT 23 470 Sucrose Transporter Gene Family AT1G09960 70.6 6.0e-193 670.6
Bda13g01439 BCT 12 482 Sucrose Transporter Gene Family AT1G09960 52.6 1.6e-137 486.5
Bda04g00635 . 11 356 Sucrose Transporter Gene Family AT1G09960 50.4 2.2e-99 359.8
Bda13g01439 BCT 10 492 Sucrose Transporter Gene Family AT1G71890 59.3 1.8e-165 579.3
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G71890 58.0 1.4e-162 569.7
Bda07g00816 . 15 450 Sucrose Transporter Gene Family AT1G71890 54.9 6.7e-136 481.1
Bda04g00635 . 15 394 Sucrose Transporter Gene Family AT1G71890 50.2 2.5e-122 436.0
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT5G43610 62.0 9.9e-169 590.1
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT5G43610 60.6 1.3e-165 579.7
Bda07g00816 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 1.1e-140 496.9
Bda11g00815 BCT 22 464 Sucrose Transporter Gene Family AT5G43610 50.4 5.7e-132 468.0
Bda04g00635 . 16 356 Sucrose Transporter Gene Family AT5G43610 60.2 2.9e-120 429.1
Bda13g01439 BCT 10 400 Sucrose Transporter Gene Family AT1G66570 61.8 1.9e-142 502.7
Bda13g01438 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.6 1.6e-141 499.6
Bda07g00816 . 15 406 Sucrose Transporter Gene Family AT1G66570 61.2 1.8e-140 496.1
Bda04g00635 . 15 356 Sucrose Transporter Gene Family AT1G66570 61.2 2.9e-122 435.6
Bda11g00815 BCT 24 414 Sucrose Transporter Gene Family AT1G66570 51.5 7.6e-115 411.0
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT2G14670 62.8 1.9e-172 602.4
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT2G14670 61.5 9.9e-169 590.1
Bda07g00816 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.1 3.2e-143 505.4
Bda11g00815 BCT 13 464 Sucrose Transporter Gene Family AT2G14670 50.9 6.5e-136 481.1
Bda13g01439 BCT 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.9e-160 562.0
Bda13g01438 . 18 489 Sucrose Transporter Gene Family AT5G06170 60.3 1.7e-157 552.7
Bda07g00816 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.6 1.2e-134 476.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60