Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00643 | CAAATGGATTCTGGACGTTGGTATCATAAGCTTCAACCACGAGATAAGTTGAGGACTTTATCAAAGAGGAAGGATGTTGAAGGTGGAAGCAAGGAAGACTCGAATCTGTCAGCTGATGAAGAAGCTCTTTCCAATGCTACAAAACAGAAGGCTGAAGCAGCGAAGCAGTTTATTGAGAATCACTACAAGGAGCAAATGAAGAACCTACAGGACAGGAAGGAGAGACGAAATAACTTGGAAAAGAAGTTGGCTGATGCTGATGTTTCCGAGGAAGATCAGAGCAATCTCCTCAAATTCTTGGAGAAGAAGGAAACAGAATATATGAGGCTTCAAAGGCAAAAAATGGGCGTGGATGATTTTGAGTTAATGTCAATGATTGGAAAAGGCGCTTTTGGAGAGGTATTAGAAGTGTCGTTCATTTCATTGCCCCATATTGTTCGAGTTTGTAGGGAGAAGACTACAGGTCATGTATATGCTATGAAGAAACTAAAGAAATCAGAAATGCTTCGAAGGGGCCAGGTAGAGCACGTGAAAGCTGAAAGAAATTTGCTTGCTGAGGTGGAGAGCAACTGCATAGTCAAACTTTACTGTTCTTTTCAAGACGATGACTATCTTTATCTTATCATGGAATATCTACCTGGTGGTGATATGATGACTTTACTTATGAGGAAAGATATATTGACTGAGGAGGAAGCTAGATTTTATATTGCAGAAACAGTTTTAGCTATCGAATCCATCCATAAACACAATTATGTTCATAGGGATATCAAGCCTGACAACTTGCTGCTTGATAGATATGGACACTTAAGACTGTCAGATTTTGGGTTATGTAAACCCTTAGACTGCAACACAATCCAAGAACACGATTTTTCAGTAGGTAACAGTTCCAATGGGTCTGGACAGAATGATGATCGCTCTGTGGCTCCTAACCGTACACAGCAAGAGCAACTGCAACATTGGCAAAGGAATCGAAGAATGCTTGCTTATTCCACTGTTGGCACGCCAGACTATATAGCTCCTGAGGTTCTGTTGAAGAAAGGTTATGGATTGGAATGCGATTGGTGGTCCCTGGGTGCTATAATGTATGAAATGCTGATTGGCTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGCAGGAAGATAGTTAACTGGAGGACTCATTTGAAGTTTCCTGAAGAAGCAAAGTTATCTCAAGAGGCAAAAGATCTGATTAGTAAGCTCCTGTGTAGCGTTGGCCAGAGACTAGGGTCAAAAGGCGCATTTGAGATTGAGGCTCATCCATGGTTTCAAGGTATTGAATGGCATAAGCTATATCAAATAGAAGCTGCTTTCATTCCCGAGGTAAATGACGAGCTGGATACCCAAAATTTTGAGAAGTTTGAAGAGCTTGACAACCAAAATAACCCGTCCTCAAAAACTGGTCCTTGGAGAAGGATGCTCTCATCCAAGGATATTAACTTCGTTGGCTATACATACAAGAATTTCGAGATAGTAAATGACTATCAAATGCCTGGGACAGTTGAGCTGAAGAAGAAAAACACCAAATCGAGAAGACCATCCATCAAGTCACTTTTC | 1581 | 40.92 | QMDSGRWYHKLQPRDKLRTLSKRKDVEGGSKEDSNLSADEEALSNATKQKAEAAKQFIENHYKEQMKNLQDRKERRNNLEKKLADADVSEEDQSNLLKFLEKKETEYMRLQRQKMGVDDFELMSMIGKGAFGEVLEVSFISLPHIVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDILTEEEARFYIAETVLAIESIHKHNYVHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCNTIQEHDFSVGNSSNGSGQNDDRSVAPNRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGLECDWWSLGAIMYEMLIGYPPFYSDDPMSTCRKIVNWRTHLKFPEEAKLSQEAKDLISKLLCSVGQRLGSKGAFEIEAHPWFQGIEWHKLYQIEAAFIPEVNDELDTQNFEKFEELDNQNNPSSKTGPWRRMLSSKDINFVGYTYKNFEIVNDYQMPGTVELKKKNTKSRRPSIKSLF | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 55190617 | 55197756 | + | Bda033590 | Bda04g00643 | 5665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00643 | 527 | SMART | pkinase_C_6 | 432 | 496 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Bda04g00643 | 527 | Gene3D | Phosphorylase Kinase; domain 1 | 91 | 215 | - | - | |
Bda04g00643 | 527 | Pfam | Protein kinase C terminal domain | 450 | 494 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Bda04g00643 | 527 | SMART | serkin_6 | 120 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bda04g00643 | 527 | Gene3D | Transferase(Phosphotransferase) domain 1 | 330 | 449 | - | - | |
Bda04g00643 | 527 | Coils | Coil | 36 | 89 | - | - | |
Bda04g00643 | 527 | CDD | STKc_NDR_like | 118 | 495 | - | - | |
Bda04g00643 | 527 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 432 | 504 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Bda04g00643 | 527 | ProSiteProfiles | Protein kinase domain profile. | 120 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bda04g00643 | 527 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 25 | 527 | - | - | |
Bda04g00643 | 527 | SUPERFAMILY | Protein kinase-like (PK-like) | 95 | 484 | IPR011009 | - | |
Bda04g00643 | 527 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Bda04g00643 | 527 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 251 | 263 | IPR008271 | GO:0004672|GO:0006468 | |
Bda04g00643 | 527 | Gene3D | Transferase(Phosphotransferase) domain 1 | 216 | 294 | - | - | |
Bda04g00643 | 527 | Gene3D | Phosphorylase Kinase; domain 1 | 450 | 460 | - | - | |
Bda04g00643 | 527 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 25 | 527 | - | - | |
Bda04g00643 | 527 | MobiDBLite | consensus disorder prediction | 291 | 315 | - | - | |
Bda04g00643 | 527 | Pfam | Protein kinase domain | 121 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bda04g00643 | 527 | MobiDBLite | consensus disorder prediction | 8 | 38 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00643 | Bda-Chr4:55190617 | Bda08g00275 | Bda-Chr8:2863373 | 0 | dispersed | |
Bda08g01356 | Bda-Chr8:53936854 | Bda04g00643 | Bda-Chr4:55190617 | 0 | transposed | |
Bda10g00636 | Bda-Chr10:40402956 | Bda04g00643 | Bda-Chr4:55190617 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69602 | PF00069 | Pkinase | 1.50E-58 | CL0016 | Bda | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00643 | K08790 | - | tcc:18613112 | 885.945 |