Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00643 CAAATGGATTCTGGACGTTGGTATCATAAGCTTCAACCACGAGATAAGTTGAGGACTTTATCAAAGAGGAAGGATGTTGAAGGTGGAAGCAAGGAAGACTCGAATCTGTCAGCTGATGAAGAAGCTCTTTCCAATGCTACAAAACAGAAGGCTGAAGCAGCGAAGCAGTTTATTGAGAATCACTACAAGGAGCAAATGAAGAACCTACAGGACAGGAAGGAGAGACGAAATAACTTGGAAAAGAAGTTGGCTGATGCTGATGTTTCCGAGGAAGATCAGAGCAATCTCCTCAAATTCTTGGAGAAGAAGGAAACAGAATATATGAGGCTTCAAAGGCAAAAAATGGGCGTGGATGATTTTGAGTTAATGTCAATGATTGGAAAAGGCGCTTTTGGAGAGGTATTAGAAGTGTCGTTCATTTCATTGCCCCATATTGTTCGAGTTTGTAGGGAGAAGACTACAGGTCATGTATATGCTATGAAGAAACTAAAGAAATCAGAAATGCTTCGAAGGGGCCAGGTAGAGCACGTGAAAGCTGAAAGAAATTTGCTTGCTGAGGTGGAGAGCAACTGCATAGTCAAACTTTACTGTTCTTTTCAAGACGATGACTATCTTTATCTTATCATGGAATATCTACCTGGTGGTGATATGATGACTTTACTTATGAGGAAAGATATATTGACTGAGGAGGAAGCTAGATTTTATATTGCAGAAACAGTTTTAGCTATCGAATCCATCCATAAACACAATTATGTTCATAGGGATATCAAGCCTGACAACTTGCTGCTTGATAGATATGGACACTTAAGACTGTCAGATTTTGGGTTATGTAAACCCTTAGACTGCAACACAATCCAAGAACACGATTTTTCAGTAGGTAACAGTTCCAATGGGTCTGGACAGAATGATGATCGCTCTGTGGCTCCTAACCGTACACAGCAAGAGCAACTGCAACATTGGCAAAGGAATCGAAGAATGCTTGCTTATTCCACTGTTGGCACGCCAGACTATATAGCTCCTGAGGTTCTGTTGAAGAAAGGTTATGGATTGGAATGCGATTGGTGGTCCCTGGGTGCTATAATGTATGAAATGCTGATTGGCTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGCAGGAAGATAGTTAACTGGAGGACTCATTTGAAGTTTCCTGAAGAAGCAAAGTTATCTCAAGAGGCAAAAGATCTGATTAGTAAGCTCCTGTGTAGCGTTGGCCAGAGACTAGGGTCAAAAGGCGCATTTGAGATTGAGGCTCATCCATGGTTTCAAGGTATTGAATGGCATAAGCTATATCAAATAGAAGCTGCTTTCATTCCCGAGGTAAATGACGAGCTGGATACCCAAAATTTTGAGAAGTTTGAAGAGCTTGACAACCAAAATAACCCGTCCTCAAAAACTGGTCCTTGGAGAAGGATGCTCTCATCCAAGGATATTAACTTCGTTGGCTATACATACAAGAATTTCGAGATAGTAAATGACTATCAAATGCCTGGGACAGTTGAGCTGAAGAAGAAAAACACCAAATCGAGAAGACCATCCATCAAGTCACTTTTC 1581 40.92 QMDSGRWYHKLQPRDKLRTLSKRKDVEGGSKEDSNLSADEEALSNATKQKAEAAKQFIENHYKEQMKNLQDRKERRNNLEKKLADADVSEEDQSNLLKFLEKKETEYMRLQRQKMGVDDFELMSMIGKGAFGEVLEVSFISLPHIVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDILTEEEARFYIAETVLAIESIHKHNYVHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCNTIQEHDFSVGNSSNGSGQNDDRSVAPNRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGLECDWWSLGAIMYEMLIGYPPFYSDDPMSTCRKIVNWRTHLKFPEEAKLSQEAKDLISKLLCSVGQRLGSKGAFEIEAHPWFQGIEWHKLYQIEAAFIPEVNDELDTQNFEKFEELDNQNNPSSKTGPWRRMLSSKDINFVGYTYKNFEIVNDYQMPGTVELKKKNTKSRRPSIKSLF 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 55190617 55197756 + Bda033590 Bda04g00643 5665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00643 527 SMART pkinase_C_6 432 496 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bda04g00643 527 Gene3D Phosphorylase Kinase; domain 1 91 215 - -
Bda04g00643 527 Pfam Protein kinase C terminal domain 450 494 IPR017892 GO:0004674|GO:0005524|GO:0006468
Bda04g00643 527 SMART serkin_6 120 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00643 527 Gene3D Transferase(Phosphotransferase) domain 1 330 449 - -
Bda04g00643 527 Coils Coil 36 89 - -
Bda04g00643 527 CDD STKc_NDR_like 118 495 - -
Bda04g00643 527 ProSiteProfiles AGC-kinase C-terminal domain profile. 432 504 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bda04g00643 527 ProSiteProfiles Protein kinase domain profile. 120 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00643 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 527 - -
Bda04g00643 527 SUPERFAMILY Protein kinase-like (PK-like) 95 484 IPR011009 -
Bda04g00643 527 MobiDBLite consensus disorder prediction 1 48 - -
Bda04g00643 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Bda04g00643 527 Gene3D Transferase(Phosphotransferase) domain 1 216 294 - -
Bda04g00643 527 Gene3D Phosphorylase Kinase; domain 1 450 460 - -
Bda04g00643 527 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 25 527 - -
Bda04g00643 527 MobiDBLite consensus disorder prediction 291 315 - -
Bda04g00643 527 Pfam Protein kinase domain 121 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00643 527 MobiDBLite consensus disorder prediction 8 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00643 Bda-Chr4:55190617 Bda08g00275 Bda-Chr8:2863373 0 dispersed
Bda08g01356 Bda-Chr8:53936854 Bda04g00643 Bda-Chr4:55190617 0 transposed
Bda10g00636 Bda-Chr10:40402956 Bda04g00643 Bda-Chr4:55190617 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69602 PF00069 Pkinase 1.50E-58 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00643 K08790 - tcc:18613112 885.945