Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00644 ATGAAAGTGGGATACGAAGTAGTTCATGGGTCTGTGGGGACAATCCAACCCCATGAACAATGGGATTTCTCTAATTGCCTCAGAGTTGTCCAACCTCACACTTCCAGTCTCCTTACAACGCCTGTAGGAGAAAACCAGAGTTCAAACATGGAGTCTGACGAGCTTTCGGAGTGGGTTGAACATATTGCCAACCAGCTCATTGATGATTCGCCGGCTTCCAATGGATGTCGTACCTTGCATTTCGATTCGTCAATGGAGTCCTCCCTTTTAGGCGAGTTAGCGGCGAAGAAAACTGGCTCGAAACCTTGTTTCGATGCCAGTAGCGGGATTCATCAATTGAACGTCGATCTTCGATATCGTGAAGAATTAAGCAAGGTAGATGAGTACGGATTAACTCTGATTAGTCTCTTGTTCGAGTGCGCCGTAGCGATCTCTGTCGATAATCTGGCGGATGCGCATCGAATGCTGCTTGAACTAACGCAAATGGCGTCTCCGTATGGATCGTCGTGCGCAGAGCGAATCGTTGCGTATTTTGCCAAGGCCATGGCTAGTAGAGTCATAAACTCCTGGTTAGGTATGTGTTTTCCTCTGATCAACCATAAGAGCATCCATGGCGCTCTACAAGTCTTCAACGACGTCTCTCCCTTCATCAAATTCGCGCATTTCACTTCCAACCAAGCAATTTTCGAGGCCTTTCACGGCCGCGATCGAGTTCACATCGTGGATCTCGACATCATGCAAGGTCTACAATGGCCGGCTCTATTTCACATGCTCGCCTCTCGTGTCGAAGGCCCGCCTAAAGTGAGAATGACCGCCATCGGAACGTCAATGGAACTTCTAGTCGAAACCGGAACGAAACTCTCGAATTTCGCTCGGAAAATGGGAATATGTTTCGAGTTCTACCCGATCGCCAGAAAATTTGGGGAAATCGAAGCTTCCATGGTGCAATTGAGGCGGGGAGAAACACTAGCTGTCAACTGGCTACAACATTCGCTCTACGATTTCAACGGTTCCGATTGGAAAACACTGAGTCTAATCCAAACATTCAAGCCCAAAATCTTCACCCTAGTAGAACAAGACATCATTCGCGGCGGTTCATTTCTCGATCGTTTCGTCGGTTCTCTGCACTACTACTCCGCCATTTTCGACTCCCTCGGAGCTTACCTTCCGACGGACGATCCAAACCGGCACCACGTCGAGAGCTCCCTCCTGTACAGAGAAATCAACAACATATTGGCGATCGGAGGGCCGTCGCGGAGCGGAGAGGAAAAGTTTGAACAGTGGAGGAGCGAATTGAGGAAGAGTTTAACGGGAGTTCCGGCTAGCGGAAACTCAGTTTGTCAAACGCAGTTGATGTTGAGCATGTTTTCCCCTGCTCAAGGTTACACGCTCGTCAATGGCGATTTAGGGACGCTGAGTCTTGGTTGGAAGGGCACCAATCTGTACACTGCTTCTTCATGGACTTCTCCTCTTTCATCCTAA 1482 48.92 MKVGYEVVHGSVGTIQPHEQWDFSNCLRVVQPHTSSLLTTPVGENQSSNMESDELSEWVEHIANQLIDDSPASNGCRTLHFDSSMESSLLGELAAKKTGSKPCFDASSGIHQLNVDLRYREELSKVDEYGLTLISLLFECAVAISVDNLADAHRMLLELTQMASPYGSSCAERIVAYFAKAMASRVINSWLGMCFPLINHKSIHGALQVFNDVSPFIKFAHFTSNQAIFEAFHGRDRVHIVDLDIMQGLQWPALFHMLASRVEGPPKVRMTAIGTSMELLVETGTKLSNFARKMGICFEFYPIARKFGEIEASMVQLRRGETLAVNWLQHSLYDFNGSDWKTLSLIQTFKPKIFTLVEQDIIRGGSFLDRFVGSLHYYSAIFDSLGAYLPTDDPNRHHVESSLLYREINNILAIGGPSRSGEEKFEQWRSELRKSLTGVPASGNSVCQTQLMLSMFSPAQGYTLVNGDLGTLSLGWKGTNLYTASSWTSPLSS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 55202080 55203561 + Bda019621.1 Bda04g00644 5666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00644 493 PANTHER OS05G0485400 PROTEIN 7 489 - -
Bda04g00644 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 489 IPR005202 -
Bda04g00644 493 ProSiteProfiles GRAS family profile. 124 488 IPR005202 -
Bda04g00644 493 Pfam GRAS domain family 133 488 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00644 Bda-Chr4:55202080 Bda14g01092 Bda-Chr14:9748265 4.94E-131 dispersed
Bda04g00644 Bda-Chr4:55202080 Bda01g00083 Bda-Chr1:12339467 4.88E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15825 PF03514 GRAS 6.00E-100 CL0063 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00644 - - pop:7476930 642.114