Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00667 CTGATGGAATTGGATTCTTCCTCCAAAATATTTCTGGGAGTGCATTTCGTGCTCTGTGGGTTCAACTCCATTGATGAGAACGAGGTTCGGTTTAAGCTCGTCAGTGGCGGTGGAGTTGATGCTGGTCAGAATAGCCAAAGTTGCACTCACATTATTGTGGATAAACTTGTTTATGATGATTCTGTTTGTGTTGCCGCAAGAAATGATGGGAAGATGCTCGTCACAGGTCTATGGGTTAATCACAGTTATGATCTCGGAGCAGCAGTGAATGCTTTCTCAATTATGTACAGACCGGTTGTGGATCTGAATGGTATTCCAGGTGCTCAAAGATTAACCATCTGCTTGACTGGGTACCAACGGCAAGATAGGGATGATGTTATGACAATGGTTAGTTTGATGGGGGCAAAATTTTCTAAGCCATTAATTGCGCACAAGGTTACTCATCTCATATGCTATAAGTTTGAGGGTACTAAAATATTATTACTATTTGCAGGAGAGAAATATGAGCTAGCCAGAAGATTGAAAACAATAAAGCTTGTCAATCATCGTTGGTTGGAAGATTGGCAAGTCTTCTTGAGACATTGGGTGCTTCTGCCAGAAGCTAATTACAACACGAGTGGATATGACCTGGAAAATATTGAACTTGAAGCTAAGGATTCTGAAGAGGATAGTGACAACAATGTTGTAAAACATATTGGAGTGAGAAGCACAAACAGCCCTATTACTTTGCAACCTAGTTCAACTTTGAACCGGCGTTTGTCCACATCTGTCTCTGAAACTTCAAGCATATTGCCAGTTTCAACTATTTCGGAGGATCCAAAAAACATTGATGTTGCTAAGAATGCAGTATTGGTACCTGTGGACGACAATAAATGCACACTGCCAAGAAATTCCAGTGACATTGATATTTCTTGTTCTGAACTAGCTGATATTCACCTCAGAACTCCTGTGTCAAAAAAGATTAGTGATGACATTGTATCACCTTCTCTCAGTGCTAATACAGAGGCTCAGTCCGGTTCTAGAAGTTACTCAAGGAGGAACCCAAGGAAATCTACTCTTCTGCATTCTGTTGGAAGATTAAACAATTTACTTGATTCTCCAGTACCTTTCAGTGGATCAAAATTTAATCACAGTTTTGATCCACCCTTGTTCATGGCGGAGCCAGAACAGGAAAATAATGGATCTGGTCGTGCACAAACTCCTGAGAAAGAAGCTGCAGTGTCTGAAGAAGTATTAGGTAATGGGCTGCCACAGAAAAGGACTTCAGATCCTTCGAATAATTATAGCTTGAAATCATTGTCAAATCCTGTGAATGCTGAAATGGTAAGATTGAAAATAACACCTCCTTCCCTTGAAAATGATGGTCCACCTAAACTCAAGAGTTGTGATCCGAGTCTTCCACAGAATTCACCTAACAGAAGTCTGGTGGCCACATCCATTTGCCTTCCAGAGAATTCATTTGCGATTGATCCTCCGTCATCAAGAACGAGTACTGACTTAGATGGTAATGTTGACAAGATATCGCAAAGATCTTTGCAGAATCCTGGCCAAGTAGTCAGTGAATATGAGGGAGCACAGAATCAGGACACTCTCAAGCGTGTTGTGAAGGCCGGTGATGGGACTATATTAGCCACATCTCCTCCCTACACTCGCTTCCTCACCTCAGAAGTCGACTTTGCAATTGTCAGCCCAGGCATGCCACGGGTCGACATTTGGGTTCAAGAGTTTTTAAAACACGAGGTACCCTGTGTTGTGGCGGATTACTTGGTCGAATACGTTTGTAAGCCAGGATACCCTCTTGAAAAGCATGTGCTGTACAATACTCAGCCATGGGCGGAGAAATCGTTTAACAACCTCCAGAAGAAGGCTGAAGAAGTTGCCAAGGTTTCGGCCCTCGAGAATAATTTCGAGGGCAACGATATTGCGTGTCGGGTTTGCGAGTCCCACGATAGAGGGGAGGTAATGCTAATCTGTGGGGACGAAAGCGGCTCTGTAGGCTGCGGAGTTGGCATGCATATAGATTGCTGTAATCCTCCATTACAAGATATTCCAGAAGATGACTGGTTTTGTCCAGAATGTGTTTCAAACAAGAAGACGATCGTCTCTCCTAAGAAAAAAAGACGATCGAAGATGGAGTGA 2139 42.78 LMELDSSSKIFLGVHFVLCGFNSIDENEVRFKLVSGGGVDAGQNSQSCTHIIVDKLVYDDSVCVAARNDGKMLVTGLWVNHSYDLGAAVNAFSIMYRPVVDLNGIPGAQRLTICLTGYQRQDRDDVMTMVSLMGAKFSKPLIAHKVTHLICYKFEGTKILLLFAGEKYELARRLKTIKLVNHRWLEDWQVFLRHWVLLPEANYNTSGYDLENIELEAKDSEEDSDNNVVKHIGVRSTNSPITLQPSSTLNRRLSTSVSETSSILPVSTISEDPKNIDVAKNAVLVPVDDNKCTLPRNSSDIDISCSELADIHLRTPVSKKISDDIVSPSLSANTEAQSGSRSYSRRNPRKSTLLHSVGRLNNLLDSPVPFSGSKFNHSFDPPLFMAEPEQENNGSGRAQTPEKEAAVSEEVLGNGLPQKRTSDPSNNYSLKSLSNPVNAEMVRLKITPPSLENDGPPKLKSCDPSLPQNSPNRSLVATSICLPENSFAIDPPSSRTSTDLDGNVDKISQRSLQNPGQVVSEYEGAQNQDTLKRVVKAGDGTILATSPPYTRFLTSEVDFAIVSPGMPRVDIWVQEFLKHEVPCVVADYLVEYVCKPGYPLEKHVLYNTQPWAEKSFNNLQKKAEEVAKVSALENNFEGNDIACRVCESHDRGEVMLICGDESGSVGCGVGMHIDCCNPPLQDIPEDDWFCPECVSNKKTIVSPKKKRRSKME 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 55352467 55358600 + Bda019646.1 Bda04g00667 5689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00667 712 MobiDBLite consensus disorder prediction 330 349 - -
Bda04g00667 712 Gene3D BRCT domain 518 608 IPR036420 -
Bda04g00667 712 SUPERFAMILY FYVE/PHD zinc finger 610 695 IPR011011 -
Bda04g00667 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 700 IPR013083 -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 3 498 IPR044254 -
Bda04g00667 712 ProSiteProfiles BRCT domain profile. 109 187 IPR001357 -
Bda04g00667 712 Pfam twin BRCT domain 111 184 IPR001357 -
Bda04g00667 712 SUPERFAMILY BRCT domain 8 88 IPR036420 -
Bda04g00667 712 Gene3D BRCT domain 1 94 IPR036420 -
Bda04g00667 712 SUPERFAMILY BRCT domain 110 203 IPR036420 -
Bda04g00667 712 SMART BRCT_7 106 192 IPR001357 -
Bda04g00667 712 SMART BRCT_7 513 596 IPR001357 -
Bda04g00667 712 SMART BRCT_7 8 86 IPR001357 -
Bda04g00667 712 MobiDBLite consensus disorder prediction 418 432 - -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 528 693 IPR044254 -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 528 693 - -
Bda04g00667 712 Pfam BRCA1 C Terminus (BRCT) domain 7 56 IPR001357 -
Bda04g00667 712 MobiDBLite consensus disorder prediction 448 472 - -
Bda04g00667 712 Pfam PHD-finger 643 695 IPR019787 -
Bda04g00667 712 Gene3D BRCT domain 99 232 IPR036420 -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 3 498 - -
Bda04g00667 712 MobiDBLite consensus disorder prediction 379 432 - -
Bda04g00667 712 SMART PHD_3 642 694 IPR001965 -
Bda04g00667 712 ProSiteProfiles Zinc finger PHD-type profile. 640 696 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00667 Bda-Chr4:55352467 Bda07g01060 Bda-Chr7:12461871 2.93E-10 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15827 PF12738 PTCB-BRCT 1.40E-14 CL0459 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00667 K10728 - zju:107426340 360.533