Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00667 CTGATGGAATTGGATTCTTCCTCCAAAATATTTCTGGGAGTGCATTTCGTGCTCTGTGGGTTCAACTCCATTGATGAGAACGAGGTTCGGTTTAAGCTCGTCAGTGGCGGTGGAGTTGATGCTGGTCAGAATAGCCAAAGTTGCACTCACATTATTGTGGATAAACTTGTTTATGATGATTCTGTTTGTGTTGCCGCAAGAAATGATGGGAAGATGCTCGTCACAGGTCTATGGGTTAATCACAGTTATGATCTCGGAGCAGCAGTGAATGCTTTCTCAATTATGTACAGACCGGTTGTGGATCTGAATGGTATTCCAGGTGCTCAAAGATTAACCATCTGCTTGACTGGGTACCAACGGCAAGATAGGGATGATGTTATGACAATGGTTAGTTTGATGGGGGCAAAATTTTCTAAGCCATTAATTGCGCACAAGGTTACTCATCTCATATGCTATAAGTTTGAGGGTACTAAAATATTATTACTATTTGCAGGAGAGAAATATGAGCTAGCCAGAAGATTGAAAACAATAAAGCTTGTCAATCATCGTTGGTTGGAAGATTGGCAAGTCTTCTTGAGACATTGGGTGCTTCTGCCAGAAGCTAATTACAACACGAGTGGATATGACCTGGAAAATATTGAACTTGAAGCTAAGGATTCTGAAGAGGATAGTGACAACAATGTTGTAAAACATATTGGAGTGAGAAGCACAAACAGCCCTATTACTTTGCAACCTAGTTCAACTTTGAACCGGCGTTTGTCCACATCTGTCTCTGAAACTTCAAGCATATTGCCAGTTTCAACTATTTCGGAGGATCCAAAAAACATTGATGTTGCTAAGAATGCAGTATTGGTACCTGTGGACGACAATAAATGCACACTGCCAAGAAATTCCAGTGACATTGATATTTCTTGTTCTGAACTAGCTGATATTCACCTCAGAACTCCTGTGTCAAAAAAGATTAGTGATGACATTGTATCACCTTCTCTCAGTGCTAATACAGAGGCTCAGTCCGGTTCTAGAAGTTACTCAAGGAGGAACCCAAGGAAATCTACTCTTCTGCATTCTGTTGGAAGATTAAACAATTTACTTGATTCTCCAGTACCTTTCAGTGGATCAAAATTTAATCACAGTTTTGATCCACCCTTGTTCATGGCGGAGCCAGAACAGGAAAATAATGGATCTGGTCGTGCACAAACTCCTGAGAAAGAAGCTGCAGTGTCTGAAGAAGTATTAGGTAATGGGCTGCCACAGAAAAGGACTTCAGATCCTTCGAATAATTATAGCTTGAAATCATTGTCAAATCCTGTGAATGCTGAAATGGTAAGATTGAAAATAACACCTCCTTCCCTTGAAAATGATGGTCCACCTAAACTCAAGAGTTGTGATCCGAGTCTTCCACAGAATTCACCTAACAGAAGTCTGGTGGCCACATCCATTTGCCTTCCAGAGAATTCATTTGCGATTGATCCTCCGTCATCAAGAACGAGTACTGACTTAGATGGTAATGTTGACAAGATATCGCAAAGATCTTTGCAGAATCCTGGCCAAGTAGTCAGTGAATATGAGGGAGCACAGAATCAGGACACTCTCAAGCGTGTTGTGAAGGCCGGTGATGGGACTATATTAGCCACATCTCCTCCCTACACTCGCTTCCTCACCTCAGAAGTCGACTTTGCAATTGTCAGCCCAGGCATGCCACGGGTCGACATTTGGGTTCAAGAGTTTTTAAAACACGAGGTACCCTGTGTTGTGGCGGATTACTTGGTCGAATACGTTTGTAAGCCAGGATACCCTCTTGAAAAGCATGTGCTGTACAATACTCAGCCATGGGCGGAGAAATCGTTTAACAACCTCCAGAAGAAGGCTGAAGAAGTTGCCAAGGTTTCGGCCCTCGAGAATAATTTCGAGGGCAACGATATTGCGTGTCGGGTTTGCGAGTCCCACGATAGAGGGGAGGTAATGCTAATCTGTGGGGACGAAAGCGGCTCTGTAGGCTGCGGAGTTGGCATGCATATAGATTGCTGTAATCCTCCATTACAAGATATTCCAGAAGATGACTGGTTTTGTCCAGAATGTGTTTCAAACAAGAAGACGATCGTCTCTCCTAAGAAAAAAAGACGATCGAAGATGGAGTGA 2139 42.78 LMELDSSSKIFLGVHFVLCGFNSIDENEVRFKLVSGGGVDAGQNSQSCTHIIVDKLVYDDSVCVAARNDGKMLVTGLWVNHSYDLGAAVNAFSIMYRPVVDLNGIPGAQRLTICLTGYQRQDRDDVMTMVSLMGAKFSKPLIAHKVTHLICYKFEGTKILLLFAGEKYELARRLKTIKLVNHRWLEDWQVFLRHWVLLPEANYNTSGYDLENIELEAKDSEEDSDNNVVKHIGVRSTNSPITLQPSSTLNRRLSTSVSETSSILPVSTISEDPKNIDVAKNAVLVPVDDNKCTLPRNSSDIDISCSELADIHLRTPVSKKISDDIVSPSLSANTEAQSGSRSYSRRNPRKSTLLHSVGRLNNLLDSPVPFSGSKFNHSFDPPLFMAEPEQENNGSGRAQTPEKEAAVSEEVLGNGLPQKRTSDPSNNYSLKSLSNPVNAEMVRLKITPPSLENDGPPKLKSCDPSLPQNSPNRSLVATSICLPENSFAIDPPSSRTSTDLDGNVDKISQRSLQNPGQVVSEYEGAQNQDTLKRVVKAGDGTILATSPPYTRFLTSEVDFAIVSPGMPRVDIWVQEFLKHEVPCVVADYLVEYVCKPGYPLEKHVLYNTQPWAEKSFNNLQKKAEEVAKVSALENNFEGNDIACRVCESHDRGEVMLICGDESGSVGCGVGMHIDCCNPPLQDIPEDDWFCPECVSNKKTIVSPKKKRRSKME 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 55352467 55358600 + Bda019646.1 Bda04g00667 5689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00667 712 MobiDBLite consensus disorder prediction 330 349 - -
Bda04g00667 712 Gene3D BRCT domain 518 608 IPR036420 -
Bda04g00667 712 SUPERFAMILY FYVE/PHD zinc finger 610 695 IPR011011 -
Bda04g00667 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 700 IPR013083 -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 3 498 IPR044254 -
Bda04g00667 712 ProSiteProfiles BRCT domain profile. 109 187 IPR001357 -
Bda04g00667 712 Pfam twin BRCT domain 111 184 IPR001357 -
Bda04g00667 712 SUPERFAMILY BRCT domain 8 88 IPR036420 -
Bda04g00667 712 Gene3D BRCT domain 1 94 IPR036420 -
Bda04g00667 712 SUPERFAMILY BRCT domain 110 203 IPR036420 -
Bda04g00667 712 SMART BRCT_7 106 192 IPR001357 -
Bda04g00667 712 SMART BRCT_7 513 596 IPR001357 -
Bda04g00667 712 SMART BRCT_7 8 86 IPR001357 -
Bda04g00667 712 MobiDBLite consensus disorder prediction 418 432 - -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 528 693 IPR044254 -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 528 693 - -
Bda04g00667 712 Pfam BRCA1 C Terminus (BRCT) domain 7 56 IPR001357 -
Bda04g00667 712 MobiDBLite consensus disorder prediction 448 472 - -
Bda04g00667 712 Pfam PHD-finger 643 695 IPR019787 -
Bda04g00667 712 Gene3D BRCT domain 99 232 IPR036420 -
Bda04g00667 712 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 3 498 - -
Bda04g00667 712 MobiDBLite consensus disorder prediction 379 432 - -
Bda04g00667 712 SMART PHD_3 642 694 IPR001965 -
Bda04g00667 712 ProSiteProfiles Zinc finger PHD-type profile. 640 696 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00667 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - zju:107426340 360.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00667 Bda-Chr4:55352467 Bda07g01060 Bda-Chr7:12461871 2.93E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g376 Blo05g00261 . Bda04g00667 . . Bpe06g00577 . . Cmo08g00451 Cmo17g01015 . . . . Sed01g3474 Cpe17g00757 . Bhi09g00851 Tan06g0741 Cmetu01g0649 . Hepe03g1847 . . Cla09g00483 Cam09g0520 Cec09g0515 Cco09g0510 Clacu09g0524 . Cre09g0499 Cone17ag0426 . . . Lsi02g02465 Csa07g01898 . Cme01g02206 . . . . . . . . . . . Cma08g00461 Cma17g01040 . Car17g00992 . Cpe12g00897 . . . . . . . . . . . . . . . . Chy01g01745 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g01342 . 7 358 Core DNA Replication Machinery Family AT2G37560 67.6 8.8e-140 493.4
Bda04g00178 . 7 278 Core DNA Replication Machinery Family AT2G37560 54.2 8.3e-98 354.0
Bda01g01840 . 1 402 Core DNA Replication Machinery Family AT2G01120 61.3 6.6e-137 484.2
Bda08g00143 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.7 5.8e-181 630.9
Bda01g02162 . 1 264 Core DNA Replication Machinery Family AT1G26840 68.9 7.9e-94 340.5
Bda06g00243 . 1 795 Core DNA Replication Machinery Family AT1G79150 55.0 1.4e-223 773.1
Bda09g00338 . 1 955 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1360.1
Bda02g00085 . 1 500 Core DNA Replication Machinery Family AT5G46280 69.1 8.6e-217 750.0
Bda14g00572 BCT 6 734 Core DNA Replication Machinery Family AT2G16440 73.2 3.3e-313 1070.8
Bda09g00764 . 1 873 Core DNA Replication Machinery Family AT5G44635 68.5 0.0e+00 1135.2
Bda10g00656 . 1 585 Core DNA Replication Machinery Family AT4G02060 82.6 3.9e-283 970.7
Bda02g00849 . 1 399 Core DNA Replication Machinery Family AT2G29680 63.4 3.6e-142 501.9
Bda02g00849 . 1 369 Core DNA Replication Machinery Family AT1G07270 63.4 6.6e-130 461.1
Bda10g00488 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 8.9e-257 882.9
Bda10g00495 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.9 9.9e-256 879.4
Bda04g00428 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 8.6e-252 866.3
Bda05g01111 . 1 469 Core DNA Replication Machinery Family AT3G25100 77.6 1.8e-193 672.5
Bda03g01734 . 7 215 Core DNA Replication Machinery Family AT3G09660 79.4 8.7e-90 328.6
Bda05g00009 . 7 632 Core DNA Replication Machinery Family AT2G14050 76.7 3.3e-281 964.1
Bda08g00993 . 6 395 Core DNA Replication Machinery Family AT2G20980 54.0 8.9e-112 400.6
Bda10g00977 . 1 955 Core DNA Replication Machinery Family AT1G77320 50.5 3.9e-257 884.8
Bda04g00667 . 529 624 Core DNA Replication Machinery Family AT4G02110 74.0 1.0e-41 169.5
Bda12g00659 . 1 191 Core DNA Replication Machinery Family AT1G80190 68.6 9.9e-75 276.6
Bda06g00222 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bda09g00567 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda09g00575 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda08g00710 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 2.1e-58 221.9
Bda11g01457 . 1 145 Core DNA Replication Machinery Family AT3G12530 68.3 2.6e-56 214.9
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT1G19080 67.6 6.8e-70 260.4
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT3G55490 67.6 6.8e-70 260.4
Bda13g00221 . 15 164 Core DNA Replication Machinery Family AT5G49010 68.0 3.5e-53 204.9
Bda14g01239 . 1 1546 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1732.2
Bda14g01247 . 1 597 Core DNA Replication Machinery Family AT5G67100 66.3 3.1e-237 819.3
Bda10g00962 . 2 664 Core DNA Replication Machinery Family AT1G67630 53.0 2.0e-198 689.1
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda08g00470 . 1 418 Core DNA Replication Machinery Family AT5G41880 61.1 2.5e-163 572.0
Bda04g00382 . 27 1166 Core DNA Replication Machinery Family AT5G63960 77.1 0.0e+00 1753.4
Bda05g01086 . 4 440 Core DNA Replication Machinery Family AT2G42120 75.6 1.6e-199 692.2
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda02g00714 . 2 2110 Core DNA Replication Machinery Family AT1G08260 68.8 0.0e+00 2882.4
Bda02g00714 . 9 2217 Core DNA Replication Machinery Family AT2G27120 65.9 0.0e+00 2858.2
Bda06g00861 . 2 202 Core DNA Replication Machinery Family AT5G22110 77.6 1.5e-92 337.0
Bda09g01383 . 1 826 Core DNA Replication Machinery Family AT5G22010 62.4 8.5e-267 916.8
Bda08g00530 . 3 331 Core DNA Replication Machinery Family AT1G63160 89.7 1.2e-170 595.9
Bda11g00726 BCT 1 355 Core DNA Replication Machinery Family AT5G27740 85.1 7.1e-177 616.7
Bda03g00016 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 1.9e-152 535.4
Bda13g01478 BCT 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 3.1e-159 558.1
Bda01g01451 . 14 187 Core DNA Replication Machinery Family AT1G77470 51.6 5.5e-39 158.7
Bda11g01026 . 26 612 Core DNA Replication Machinery Family AT2G06510 68.8 2.2e-250 861.7
Bda06g00521 . 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.6e-243 838.2
Bda15g00624 . 1 626 Core DNA Replication Machinery Family AT5G08020 67.0 4.8e-242 833.9
Bda06g00521 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.5 8.5e-242 833.2
Bda15g00624 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.2 1.6e-240 828.9
Bda01g01616 . 1 361 Core DNA Replication Machinery Family AT5G26680 85.0 4.0e-179 624.4
Bda13g00449 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 1.6e-43 175.3
Bda13g00451 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 2.1e-43 174.9
Bda15g00131 . 1 299 Core DNA Replication Machinery Family AT2G25100 68.2 5.5e-116 414.1
Bda09g01436 . 46 765 Core DNA Replication Machinery Family AT1G08130 61.9 8.2e-258 886.7
Bda09g01436 . 223 765 Core DNA Replication Machinery Family AT1G49250 66.3 3.9e-205 711.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008587 1 3 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15827 PF12738 PTCB-BRCT 1.40E-14 CL0459 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00667 Bda_Chr04 FPKM 2.254847 3.498863 2.183743 2.142056 1.578088 1.804863 1.080266 1.761798 1.643485