Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00779 ATGCCTTTAAAGACTAAGAAGTCTTCAAAAGCACAATCCAGATTATCCATCTCGGACCAGATTCAATCTCCCCGGCCATCCCATTTGAACCCAACTACAAATCCGGAATTCGAGGATGAGGATTTGGTGTCTTATCTTGAAGAGGCTTCTCGTAAATTTCCTTCATTGATCGGAAAGTCAGCATTCATAGGCCGGGTGATTGATGTGGAAGCTGACTTCAAAGGCTGTAAGATTTGGCTCTCAGAGTCTTCCATGGTTGCTTCTTCTCTTGTTCCCGGGGCTATCGTTTCGGTATCGCTCATTGCACAAAGGGCAAATTTTTCAAATGGATTTCCTCTTTCCTCATTAGGAGATGAAAGTGTTAGATCTTTTGAGGTTGATACTCCAGATAGGTTGGCTAATGAACCAGGAAACTACTTTGCACTTGCGACCGTTTATTCTTCTGTTAAGGTTTTGAAGGACGGAGTGCGATTGTCTTCGAACCTTTCACATACCTTGGGATGCCCAACATCTGGGAGGAATTTGTTTGTATACCCTTTACGAAATCAATCAAACTCTGGTATGGTAACTGGGGGGAAGAAACAAAATGGCAATGAGGTTGACTTTTTTCGAACATACAACTGCAAGGAATTGTATCTAGAGTTTGTTTCTTCTGATAGTAGACAAACGTTGAACAGTAATATGCTGTTTTCCAGTAACTTTCATCTTGAAAAATCTTATGGTGAAAATGAAAATGAAAATGAAAAAGTTACATCACCTAAGACTCCATTGCATCAGTCAAAGCTTAGCTTGCCTAGTACTAGAAAATTAATTTCACCCGTAAGTGAAGAATCAGCATTTAGTTCATCAAATCTGAAAATTTCATCTTCTGATCCATCTCGTATTAAGGAGATACTAGAGGATAAGACTGCCAAAAAGATTCTGGAAACCTGCGCTAGCTCATGGTTACATTCTCGTTGTTTACTTCGGGGAAATCTTGTAGTCATACCATTACTTTCAAAGCTTTGCACTTTTTGTGTTGTTGATGCCACAGAGTTGCCATTAGATAATGCCAATTGCGATATAAATGACAAAAGTCATAACTATATGCATGAAGCTCCTGAGTTACAAGAGCCTGGAAATTATGTTTTGACTATAAGTAATCGAACAAGAGTATTATTCCATGTCTCGTCATCAACTAGTGTGTCTACATTGATGCAAAATAGAATTTCAACTAGTGTAAACCTTGGAAGTAAAGATCTTAAAGTCAAAGGAGAAATTTCAAAATTAGGTGGACTTTCCAAAGAATATTCAGTTTTAAAGGATATCATAGCCGCGACATTTGCAAATATGCTGTCTAGTGTTGGTTTACGAACTACAAAGGGAGTACTGCTTCATGGTCCACCTGGTACAGGAAAGACTTCTCTTGCTAGATTATGTGCTTATGACGCTGATGTCAATTTTTTCTCTTTGAATGGACCTGAAATTATTAGTCAATATTATGGAGAAAGTGAACAAGCACTGAATGAGGTTTTTGAATCTGCCATGCGAGCTGCACCTTCTGTGGTGTTTATTGATGAGTTAGATGCTATTGCGCCTGCAAGAAATGATGGAGTTGAAGCTTTATCTCAAAGAATAGTTGCTACATTATTGAATTTGATGGATGGGATTGGCAAAACTGATGGGTTTATTGTGATTGCTGCTACTAACAGGCTTGATACTATTGAGCCTGCACTCAGACGACCTGGTAGATTTGACAGAGAAATTGAAATAGGAGTGCCATCCCCTCAGCAAAGATTGGATATATTGCTTGCTCTTCTCAGTGAAATGCAACATTCACTTCTTGACTCACAAGTTCGACATCTTGCTGTGGTTACACATGGCTTTGTTGGTGCTGATCTGGGTGCCCTTTGCAATGAGGCAGCTTTGGTTTGTCTGAGGCGCTTTGATAAGTCTAGATGTGTATTAAAAGTGACTTTTGAAGACTTTGAGAGGGCCAGAATGAAAGTGAGACCAAGCGCCATGCGAGAGGTCGTAATTGAGGTTCCAAAAGTTAAATGGGAAGATGTGGGTGGCCAAACGGAGGTCAAGAGACAACTGATGGAAGTAGTAGAATGGCCACAAAAACATCAAGATGCATTTGAACGTATTGGTACTCGACCTCCACCAGGAGTCTTGTTATTTGGCCCTCCTGGTTGCAGCAAAACTTTGATGGCACGAGCTGTAGCTTCTGAAGCGGGGCTGAATTTCCTTGCCGTGAAGGGTCCAGAGCTTTTCAGCAAGTGGGTTGGTGAGTCTGAGAAGGCTGTAAAATCTCTGTTTGCGAAAGCTCGGGCAAATGCACCTTCAATCATATTTTTCGATGAAATAGATGGTTTAGCCATCATTCGTGGAAAGGAAAGTGAGGGTGTCTCAGTTTCCGATAGAGTTATCACTCAACTTCTTGTTGAAATGGACGGTTTGCACCAGAGAGTTAATGTTACTGTGATTGCTGCTACAAATCGGCTGGATAAGATTGATCCAGCTCTTTTAAGACCAGGACGCTTTGACCGGTTGCTGTATGTTGGGCCTCCGAATAAAATTGATCGAGAAGAGATATTCTGCATTCATTTGCGCAAAATTCCTTGCAGCACTGATGTCAATGTAGGAGAGCTTGCTGATCTCACCAAAGGCTGCACTGGAGCTGACATATCATTAATCTGCCGTGAGGCAGCTCTTGCTGCCATAGAGGAGAGCCTGGAGGCTTCAGAAATAACAATGCAACAGTTGAAGACTGCAATTGAACTGGTAAAGCCATCAGAAACTGATCCCTACCAAGAATTGTCAACCAAGTTTCAAAGGTTTTTCGTCTCTAATAATATGGGATCTGAAGTCGGACCTGAGCACTATGCAGCTCAATCTAGCTGGTTTTCTTTCTGGTGA 2901 41.12 MPLKTKKSSKAQSRLSISDQIQSPRPSHLNPTTNPEFEDEDLVSYLEEASRKFPSLIGKSAFIGRVIDVEADFKGCKIWLSESSMVASSLVPGAIVSVSLIAQRANFSNGFPLSSLGDESVRSFEVDTPDRLANEPGNYFALATVYSSVKVLKDGVRLSSNLSHTLGCPTSGRNLFVYPLRNQSNSGMVTGGKKQNGNEVDFFRTYNCKELYLEFVSSDSRQTLNSNMLFSSNFHLEKSYGENENENEKVTSPKTPLHQSKLSLPSTRKLISPVSEESAFSSSNLKISSSDPSRIKEILEDKTAKKILETCASSWLHSRCLLRGNLVVIPLLSKLCTFCVVDATELPLDNANCDINDKSHNYMHEAPELQEPGNYVLTISNRTRVLFHVSSSTSVSTLMQNRISTSVNLGSKDLKVKGEISKLGGLSKEYSVLKDIIAATFANMLSSVGLRTTKGVLLHGPPGTGKTSLARLCAYDADVNFFSLNGPEIISQYYGESEQALNEVFESAMRAAPSVVFIDELDAIAPARNDGVEALSQRIVATLLNLMDGIGKTDGFIVIAATNRLDTIEPALRRPGRFDREIEIGVPSPQQRLDILLALLSEMQHSLLDSQVRHLAVVTHGFVGADLGALCNEAALVCLRRFDKSRCVLKVTFEDFERARMKVRPSAMREVVIEVPKVKWEDVGGQTEVKRQLMEVVEWPQKHQDAFERIGTRPPPGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSLFAKARANAPSIIFFDEIDGLAIIRGKESEGVSVSDRVITQLLVEMDGLHQRVNVTVIAATNRLDKIDPALLRPGRFDRLLYVGPPNKIDREEIFCIHLRKIPCSTDVNVGELADLTKGCTGADISLICREAALAAIEESLEASEITMQQLKTAIELVKPSETDPYQELSTKFQRFFVSNNMGSEVGPEHYAAQSSWFSFW 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57720506 57727106 - Bda019774.1 Bda04g00779 5801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00779 966 CDD AAA 450 585 - -
Bda04g00779 966 Gene3D - 678 850 IPR027417 -
Bda04g00779 966 Gene3D - 851 916 - -
Bda04g00779 966 ProSitePatterns AAA-protein family signature. 820 838 IPR003960 GO:0005524|GO:0016887
Bda04g00779 966 Gene3D - 588 677 - -
Bda04g00779 966 Gene3D - 407 587 IPR027417 -
Bda04g00779 966 PANTHER AAA-FAMILY ATPASE 644 948 - -
Bda04g00779 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 932 IPR027417 -
Bda04g00779 966 Pfam ATPase family associated with various cellular activities (AAA) 718 849 IPR003959 GO:0005524|GO:0016887
Bda04g00779 966 Pfam ATPase family associated with various cellular activities (AAA) 456 585 IPR003959 GO:0005524|GO:0016887
Bda04g00779 966 MobiDBLite consensus disorder prediction 1 33 - -
Bda04g00779 966 PANTHER - 42 642 - -
Bda04g00779 966 PANTHER - 644 948 - -
Bda04g00779 966 Coils Coil 899 919 - -
Bda04g00779 966 PANTHER AAA-FAMILY ATPASE 42 642 - -
Bda04g00779 966 Pfam AAA+ lid domain 872 917 IPR041569 -
Bda04g00779 966 Pfam AAA+ lid domain 613 657 IPR041569 -
Bda04g00779 966 MobiDBLite consensus disorder prediction 1 36 - -
Bda04g00779 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 666 IPR027417 -
Bda04g00779 966 SMART AAA_5 452 588 IPR003593 -
Bda04g00779 966 SMART AAA_5 714 852 IPR003593 -
Bda04g00779 966 MobiDBLite consensus disorder prediction 241 263 - -
Bda04g00779 966 CDD AAA 684 850 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00745 Bda-Chr2:48209698 Bda04g00779 Bda-Chr4:57720506 9.17E-57 dispersed
Bda03g01513 Bda-Chr3:53648014 Bda04g00779 Bda-Chr4:57720506 0 dispersed
Bda03g01518 Bda-Chr3:53824996 Bda04g00779 Bda-Chr4:57720506 4.16E-41 dispersed
Bda03g01520 Bda-Chr3:54034453 Bda04g00779 Bda-Chr4:57720506 1.03E-32 dispersed
Bda04g00779 Bda-Chr4:57720506 Bda15g00824 Bda-Chr15:12504110 1.04E-118 dispersed
Bda04g00779 Bda-Chr4:57720506 Bda09g01446 Bda-Chr9:46246712 8.13E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00779 - - cam:101494446 984.941