Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00785 ATGGAGAAAAAAAAGTATCCGATCGGACCAGAGCATTATACTCTGTATGAGGAGGTGGGCCAAGGTGCGAGCGCTTCAGTTCACCGTGCTTTTTGTAAACCTTTGGAGGAGATCGTAGCCATAAAGATCCTAGATTTTGAACGCGACAATATCGATTTGAACAATATATCTCGAGAAGCTCAAATAATGATCCTGGTTGACCATCCTAATGTCCTCAAATCACACTGCTCTTTTGTTAGCGACCATAATTTGTGGGTCGTCATGCCATTCATGTCTGGTGGATCATGTCTCCACATATTGAAAGCTGCATATCCAGATGGTTTTGAAGAAGTAGTTATAGCAACAGTATTGCGTGAGGCATTGAAGGGTTTAGAGTATCTTCATCATCATGGGCACATACATCGAGATGTGAAAGCTGGAAATATCCTTATCGATACACGAGGTGCGATCAAGTTGGGTGATTTTGGAGTGTCTGCTTGCCTTTTTGATTCAGGTGATAGGCAACGCGTGAGGAATACATTTGTTGGGACACCATGCTGGATGGCGCCCGAGGTTATGGAACAACTGCATGGCTACGACTTAAAAGCTGACATATGGTCTTTTGGCATAACTGCATTAGAACTTGCCCATGGCCATGCTCCTTTCTCAAAGTATCCTCCAATGAAGGTACTGTTGATGACCTTGCAAAATGCTCCTCCTGGTCTTGATTACGAGAGGGATAAAAAATTCTCTAAGTCTTTTAAGCAGATGATTGCAAGTTGTTTGGTGAAAGATCCATCTAAACGTCCATCTGCACAGAAGTTGTTGAAACATTCTTTTTTCAAGCAAGCTCGATCATATGAATATATAGAGCGCTCTCTGTTAGAGGGCCTGCCTGCTCTTGGTGATCGTATGGAAGCCCTTAAGAGAAAGGAAGAAGATATGCTTGCCCAAAAGAAAATGCCAGATGGGCAAAAGGAGGAAATTTCACAGAATGAATATAAACGAGGAATAAGTGGATGGAATTTCAATCTTGAAGATGTGAAGGCGCAAGCATCATTGATCCAGGATGTTGATGATCCCATTTCTGATAATAATCTAGGTGGGATCTCTAATGCTTTATCCGCATATGATGGTCAAGAAAAGCAATCACAAGGTTCTTCTGAAGTTACAGATGTGGTATGTCTACTATATTCATGA 1179 41.82 MEKKKYPIGPEHYTLYEEVGQGASASVHRAFCKPLEEIVAIKILDFERDNIDLNNISREAQIMILVDHPNVLKSHCSFVSDHNLWVVMPFMSGGSCLHILKAAYPDGFEEVVIATVLREALKGLEYLHHHGHIHRDVKAGNILIDTRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLHGYDLKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSAQKLLKHSFFKQARSYEYIERSLLEGLPALGDRMEALKRKEEDMLAQKKMPDGQKEEISQNEYKRGISGWNFNLEDVKAQASLIQDVDDPISDNNLGGISNALSAYDGQEKQSQGSSEVTDVVCLLYS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57781203 57785026 + Bda019781.1 Bda04g00785 5807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00785 392 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Bda04g00785 392 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Bda04g00785 392 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00785 392 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00785 392 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 379 - -
Bda04g00785 392 Gene3D Transferase(Phosphotransferase) domain 1 94 328 - -
Bda04g00785 392 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00785 392 CDD STKc_OSR1_SPAK 11 274 - -
Bda04g00785 392 SUPERFAMILY Protein kinase-like (PK-like) 11 286 IPR011009 -
Bda04g00785 392 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00785 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - jre:108985864 703.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00785 Bda-Chr4:57781203 Bda13g01619 Bda-Chr13:39677955 0 dispersed
Bda04g00785 Bda-Chr4:57781203 Bda01g01279 Bda-Chr1:48193562 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g927 Blo05g00167 . Bda04g00785 . Bpe06g00667 Bpe10g00590 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag1129 . . . . . . . Blo07g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00318 . 1 688 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.6e-215 745.3
Bda01g02122 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bda07g00318 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 6.1e-233 803.9
Bda01g02122 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.8e-67 252.3
Bda01g02122 . 9 825 MAP Kinase Kinase Kinase Kinase AT1G69220 57.8 4.9e-242 834.3
Bda07g00318 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.8 7.2e-68 255.8
Bda13g01619 BCT 1 589 MAP Kinase Kinase Kinase Kinase AT5G14720 66.7 6.6e-224 773.9
Bda01g01279 BCT 1 579 MAP Kinase Kinase Kinase Kinase AT5G14720 64.9 1.3e-216 749.6
Bda04g00785 . 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 3.1e-149 525.8
Bda06g01211 . 3 354 MAP Kinase Kinase Kinase Kinase AT5G14720 70.0 1.6e-145 513.5
Bda06g01226 . 368 666 MAP Kinase Kinase Kinase Kinase AT5G14720 71.7 3.1e-125 446.0
Bda08g00655 . 6 318 MAP Kinase Kinase Kinase Kinase AT5G14720 62.4 3.1e-125 446.0
Bda08g00655 . 8 634 MAP Kinase Kinase Kinase Kinase AT4G24100 59.9 1.3e-204 709.9
Bda06g01211 . 5 515 MAP Kinase Kinase Kinase Kinase AT4G24100 67.9 2.8e-188 655.6
Bda06g01226 . 368 962 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 3.7e-188 655.2
Bda01g01279 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.0 1.2e-135 480.7
Bda04g00785 . 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 2.3e-134 476.5
Bda13g01619 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 6.8e-134 474.9
Bda08g00655 . 9 634 MAP Kinase Kinase Kinase Kinase AT4G10730 60.5 4.0e-208 721.5
Bda06g01211 . 6 515 MAP Kinase Kinase Kinase Kinase AT4G10730 70.8 1.2e-196 683.3
Bda06g01226 . 368 962 MAP Kinase Kinase Kinase Kinase AT4G10730 63.3 6.2e-193 671.0
Bda04g00785 . 4 358 MAP Kinase Kinase Kinase Kinase AT4G10730 66.2 1.5e-138 490.3
Bda13g01619 BCT 7 376 MAP Kinase Kinase Kinase Kinase AT4G10730 63.8 3.7e-137 485.7
Bda01g01279 BCT 1 376 MAP Kinase Kinase Kinase Kinase AT1G70430 67.0 1.3e-146 516.9
Bda13g01619 BCT 5 351 MAP Kinase Kinase Kinase Kinase AT1G70430 70.9 7.1e-145 511.1
Bda04g00785 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.6 2.7e-128 456.1
Bda06g01211 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.8 7.6e-123 438.0
Bda06g01226 . 368 713 MAP Kinase Kinase Kinase Kinase AT1G70430 56.1 1.2e-107 387.5
Bda08g00655 . 5 307 MAP Kinase Kinase Kinase Kinase AT1G70430 55.1 2.3e-103 373.2
Bda04g00785 . 1 378 MAP Kinase Kinase Kinase Kinase AT1G79640 83.6 1.1e-186 650.2
Bda13g01619 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT1G79640 68.3 4.4e-148 521.9
Bda06g01211 . 5 354 MAP Kinase Kinase Kinase Kinase AT1G79640 66.0 8.4e-139 491.1
Bda06g01226 . 368 666 MAP Kinase Kinase Kinase Kinase AT1G79640 69.2 6.9e-125 444.9
Bda08g00655 . 8 312 MAP Kinase Kinase Kinase Kinase AT1G79640 58.6 6.9e-117 418.3
Bda01g01279 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 5.6e-100 361.7
Bda13g01619 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 56.2 2.4e-98 356.3
Bda04g00785 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.7 3.5e-86 315.8
Bda06g01211 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.6e-78 290.4
Bda06g01226 . 368 615 MAP Kinase Kinase Kinase Kinase AT1G23700 53.4 5.1e-69 258.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69606 PF00069 Pkinase 8.30E-60 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00785 Bda_Chr04 FPKM 43.012821 50.167671 133.069077 138.706329 80.769821 53.421818 78.046265 45.780582 42.112534