Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00787 TTCCAGCTTGAGATGGGTATATATCTCAGCTCCCCTAAAACAGATAAGGCCTCAGAAGATGGCGAAAATGAAAAACTTCGATATGGCTTGTCCTCAATGCAAGGGTGGCGAGCAACAATGGAAGACGCCCATGCAGCCTATCCAAACTTGGACACTCATACATCTTTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGCAGTTGCAAAGTTCTGTGCTAAGTATCTTCACCAACAAGTGCTTAAGCATGAATCATACACATCTGGAGACTTGGAAACTTCTGTCCAGAAAGCCTTTCTCAGAATGGATGAAATGATGTGTGGGCAAAAAGGGTGGCGAGAATTGGCCATATTGGGAGACAAAATGGACAAGCTCTCTGGTATGTTGGAAGGATTTATATGGTCTCCAAGGGGCAGTGAAGCTAACAACCATATTGATGATTGGGCTACCGAGGAGGGGCCTCACTCGGATTTCCATGGACCAAATGCTGGATGTACAGCCTGTGTTGCGGTCATTCGGAACAACCAGCTTGTTGTTGCAAATGCTGGTGACTCACGTTGTGTTATATGCAGGAAGGGTCAGGCATTCAATTTGTCTAAAGATCACAAGCCTGATCTTGAGGTGGAGAAAGAAAGGATAATTAATGCTGGAGGCTTCATCCAAGTGGGTCGCGTCAATGGAAGTTTAAATTTGTCCAGAGCTATTGGAGATATGGAATTCAAGCAGAATAAATTTTTACCTGCAGAACAGCAGATAATAACTGCTAATCCCGATCTTAACACTGGTATGCTTTGTGATGAGGACGAGTTTCTTGTTCTAGCTTGTGATGGAATCTGGGATTGCATGTCCAGCCAACAGCTAGTTGACTTCGTACGAGAACAACTAAAAACGGAAACTAAGCTTTCTGAAATCTGTGAAAAAGTATTTGATCGGTGCTTGGCCCCAACGACCGGTGGCGAGGGATGTGACAACATGACTATGATCTTAGTTCAGTTCAAAAAACCTGTAATTACAGATGCTTCCCCTGACGAGAAGCCTTTACCGTCTGATCAAGCCTCTGATTCAAAGAAGAGCTCGGAAGACGCCGAATAG 1092 44.23 FQLEMGIYLSSPKTDKASEDGENEKLRYGLSSMQGWRATMEDAHAAYPNLDTHTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHESYTSGDLETSVQKAFLRMDEMMCGQKGWRELAILGDKMDKLSGMLEGFIWSPRGSEANNHIDDWATEEGPHSDFHGPNAGCTACVAVIRNNQLVVANAGDSRCVICRKGQAFNLSKDHKPDLEVEKERIINAGGFIQVGRVNGSLNLSRAIGDMEFKQNKFLPAEQQIITANPDLNTGMLCDEDEFLVLACDGIWDCMSSQQLVDFVREQLKTETKLSEICEKVFDRCLAPTTGGEGCDNMTMILVQFKKPVITDASPDEKPLPSDQASDSKKSSEDAE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57792619 57798606 + Bda019783.1 Bda04g00787 5809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00787 363 ProSiteProfiles PPM-type phosphatase domain profile. 27 332 IPR001932 -
Bda04g00787 363 SMART PP2C_SIG_2 32 332 IPR001932 -
Bda04g00787 363 SUPERFAMILY PP2C-like 7 333 IPR036457 -
Bda04g00787 363 Pfam Protein phosphatase 2C 142 317 IPR001932 -
Bda04g00787 363 Pfam Protein phosphatase 2C 27 106 IPR001932 -
Bda04g00787 363 ProSitePatterns PPM-type phosphatase domain signature. 56 64 IPR000222 GO:0043169
Bda04g00787 363 MobiDBLite consensus disorder prediction 349 363 - -
Bda04g00787 363 CDD PP2Cc 27 332 IPR001932 -
Bda04g00787 363 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 3 344 - -
Bda04g00787 363 MobiDBLite consensus disorder prediction 339 363 - -
Bda04g00787 363 Gene3D - 4 333 IPR036457 -
Bda04g00787 363 SMART PP2C_4 17 330 IPR001932 -
Bda04g00787 363 PANTHER PROTEIN PHOSPHATASE 2C 3 344 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00105 Bda-Chr3:950950 Bda04g00787 Bda-Chr4:57792619 4.30E-158 dispersed
Bda04g00787 Bda-Chr4:57792619 Bda01g00986 Bda-Chr1:43467643 1.64E-44 dispersed
Bda04g00787 Bda-Chr4:57792619 Bda01g01016 Bda-Chr1:43708717 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00787 K17499 - qsu:111986392 606.29