Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00794 ATGGCCATCACTGATTCTAGTTCTGGGCAGCCGCAGTTCATAGCAAGCACTGGAAACAGAAGTTTTTCTAATGTGCCGTTGATTGGGAACTCAGAATCTGATCAGATTGTTGTTCCTGATAGGAAAAGCTGGAGAAATCTATTTGCATACATGGGTCCTGGATTTCTTGTTTCAATTGCATATATTGACCCTGGAAATTTCGAGACGGATTTACAGTCGGGAGCACAATACAAATACGAGCTACTTTGGATCATACTAGTGGCTTCATGTGCTGCTCTTGTTATTCAGTCCTTGGCTGCCAATCTTGGAGTTGTCACGGGAAAGCATTTAGCAGAGCATTGCCGAACTGAATATCCTAGAGTTCCCAACTTCATTCTATGGGGGCTGGCTGAAATTTCGATAGTTGCATGCGACATTCCCGAGGTCATAGGAACGGCTTTTGCTTTGAACATGCTCTTCAAAATTCCTGTTTGGAGTGGCGTTCTTCTGACTGGGTTGAGCACATTGATGCTTCTAGCGTTACAACAATATGGGGTTAGGAAGCTCGAATTCTTGATTGCTTTTCTTGTACTTACAATTGCTGTTCACATCAGCTTCTTTATGGAGCTCGGCTACGGTAAGCCTGATGCTTCGGAAGTTCTTTACGGGCTTTTTGTCCCTCAACTCAAAGGAAATGGTGCTACTGGTCTTGCCATTTCTCTTCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTTCACTCGGCTTTGGTTCTATCCCGGAAGATTCCACGATCCGTTCGAGGAATTGAGGAAGCTTGCAGATTTTACTTGATAGAGAGCGCCTTCGCTCTCACGATCGCCTTCCTCATAAATGTGTCGGTCATTTCCGTAACTGGTGCGGTTTGCAATTCACCGGACTTAAACGCAGAAGACAAGATGAGCTGCAAAGACTTGGACTTGAACTCAGCATCCTTTTTGCTTAGAAATGTGTTGGGTAGTTGGAGTTCGAAGCTTTTCGCAATTGCTTTGTTAGCATCTGGCCAGAGTTCTACCATTACTGGCACTTATGCAGGGCAGTATGTTATGCAGGGATTTCTCGATTTACGACTGAAGCCATGGCTGCGGAACTTTCTAACTCGATGTTTGGCAATCGTGCCTAGTTTGATTGTTGCTGTCATTGGCGGCTCTGCCGGAGCTGGGAGGCTAATCATCATAGCATCGATGATTTTGTCATTTGAACTACCCTTTGCTCTTGTTCCTCTTCTCAAATTCACTAGCAGCAAGAGCAAGATGGGGACGTACGCCAATTCGACTGCAATTGCAGCGGTCACCTGGATAGTTGGCTTCCTGATCATGTCCATTAATATATACTATCTCATATCAGGCTTTCTAAGTCTTCTTCTTCACAGCCATTTAGGCATCGTGGCTGTTGTGTTCGTCGGGATAGCAGGATTCTCAGCCATTGCCGTGTATTTGGCCGGAATCTCATATCTGGTTTTCCGGAAAAACAAAGAAGCTACTAATCTTCTTGCCTTGACTATGCTTGAAAGTCGGCAAGCTGATACCGGAATTGGCAACGGAACAACTCATTGCCTCCCCAGAGAGGATATAGTCTCCATGCAATTACCTCAGAAAAGCAGTACAGCTGATATCGACTGA 1641 45.28 MAITDSSSGQPQFIASTGNRSFSNVPLIGNSESDQIVVPDRKSWRNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRTEYPRVPNFILWGLAEISIVACDIPEVIGTAFALNMLFKIPVWSGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVLTIAVHISFFMELGYGKPDASEVLYGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIEEACRFYLIESAFALTIAFLINVSVISVTGAVCNSPDLNAEDKMSCKDLDLNSASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVAVIGGSAGAGRLIIIASMILSFELPFALVPLLKFTSSKSKMGTYANSTAIAAVTWIVGFLIMSINIYYLISGFLSLLLHSHLGIVAVVFVGIAGFSAIAVYLAGISYLVFRKNKEATNLLALTMLESRQADTGIGNGTTHCLPREDIVSMQLPQKSSTADID 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57833924 57841398 + Bda019789.1 Bda04g00794 5816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00794 546 Pfam Natural resistance-associated macrophage protein 67 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 10 546 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 401 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 231 254 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 PANTHER METAL TRANSPORTER NRAMP1 10 546 - -
Bda04g00794 546 Hamap Divalent metal cation transporter MntH [mntH]. 39 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bda04g00794 546 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01718 Bda-Chr3:56677194 Bda04g00794 Bda-Chr4:57833924 6.85E-34 dispersed
Bda04g00794 Bda-Chr4:57833924 Bda14g01264 Bda-Chr14:13309200 1.35E-109 dispersed
Bda10g00770 Bda-Chr10:42135834 Bda04g00794 Bda-Chr4:57833924 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00794 K21398 - gmx:100797298 852.818