Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00804 GCCATGGCCAGACCTCAGCAGAGATTCCGAGGCGTCCGCCAACGCCACTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTACTGAAGACGAGAATTTGGCTAGGAACGTTTGAGACGGCCGAGGACGCCGCGCGAGCTTACGACGAAGCGGCGAGGCTAATGTGCGGGCCGAAAGCTCGAACCAATTTCTCGTATAATCAGAACGACCAACAGTCGTCTTCCTCGAAGCTTCTGTCTGCAACTCTAACTTCAAAGCTTCAAAAATGCTACATGGCCTCCCTTCAAATGGCCAAAAAACAACCCCCCAAACAGCCTCAACAAACCCACTATTCGTACGCCTCGACTACGAGCTGCATTCCCCAAAATAGCGCCGGAACGCACATTCAGGCGCCGGAGAAGTCGTGGATGGAAGCCGGTCAGCAGTTCCAGCATCTTGAAGACGATGATATCGAGCAGATGATCCAGGAGCTGCTTGATCTTGGATCGTTTGAGCTTCGATCTGTCGTTTCTTCTTAA 519 52.6 AMARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFSYNQNDQQSSSSKLLSATLTSKLQKCYMASLQMAKKQPPKQPQQTHYSYASTTSCIPQNSAGTHIQAPEKSWMEAGQQFQHLEDDDIEQMIQELLDLGSFELRSVVSS 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57888195 57888823 + Bda019799.1 Bda04g00804 5826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00804 172 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Bda04g00804 172 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Bda04g00804 172 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Bda04g00804 172 CDD AP2 7 64 IPR001471 GO:0003700|GO:0006355
Bda04g00804 172 PANTHER ETHYLENE RESPONSE FACTOR 2 168 - -
Bda04g00804 172 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Bda04g00804 172 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Bda04g00804 172 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Bda04g00804 172 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 168 - -
Bda04g00804 172 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00804 Bda-Chr4:57888195 Bda13g01247 Bda-Chr13:34905529 6.72E-63 dispersed
Bda12g00577 Bda-Chr12:12270133 Bda04g00804 Bda-Chr4:57888195 1.54E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15840 PF00847 AP2 1.80E-11 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00804 - - cit:102619724 195.282