Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00804 | GCCATGGCCAGACCTCAGCAGAGATTCCGAGGCGTCCGCCAACGCCACTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTACTGAAGACGAGAATTTGGCTAGGAACGTTTGAGACGGCCGAGGACGCCGCGCGAGCTTACGACGAAGCGGCGAGGCTAATGTGCGGGCCGAAAGCTCGAACCAATTTCTCGTATAATCAGAACGACCAACAGTCGTCTTCCTCGAAGCTTCTGTCTGCAACTCTAACTTCAAAGCTTCAAAAATGCTACATGGCCTCCCTTCAAATGGCCAAAAAACAACCCCCCAAACAGCCTCAACAAACCCACTATTCGTACGCCTCGACTACGAGCTGCATTCCCCAAAATAGCGCCGGAACGCACATTCAGGCGCCGGAGAAGTCGTGGATGGAAGCCGGTCAGCAGTTCCAGCATCTTGAAGACGATGATATCGAGCAGATGATCCAGGAGCTGCTTGATCTTGGATCGTTTGAGCTTCGATCTGTCGTTTCTTCTTAA | 519 | 52.6 | AMARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFSYNQNDQQSSSSKLLSATLTSKLQKCYMASLQMAKKQPPKQPQQTHYSYASTTSCIPQNSAGTHIQAPEKSWMEAGQQFQHLEDDDIEQMIQELLDLGSFELRSVVSS | 172 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 57888195 | 57888823 | + | Bda019799.1 | Bda04g00804 | 5826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00804 | 172 | SUPERFAMILY | DNA-binding domain | 8 | 66 | IPR016177 | GO:0003677 | |
Bda04g00804 | 172 | PRINTS | Ethylene responsive element binding protein signature | 31 | 47 | IPR001471 | GO:0003700|GO:0006355 | |
Bda04g00804 | 172 | PRINTS | Ethylene responsive element binding protein signature | 9 | 20 | IPR001471 | GO:0003700|GO:0006355 | |
Bda04g00804 | 172 | CDD | AP2 | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Bda04g00804 | 172 | PANTHER | ETHYLENE RESPONSE FACTOR | 2 | 168 | - | - | |
Bda04g00804 | 172 | Gene3D | AP2/ERF domain | 7 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
Bda04g00804 | 172 | Pfam | AP2 domain | 8 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Bda04g00804 | 172 | ProSiteProfiles | AP2/ERF domain profile. | 8 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Bda04g00804 | 172 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 2 | 168 | - | - | |
Bda04g00804 | 172 | SMART | rav1_2 | 8 | 71 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00804 | Bda-Chr4:57888195 | Bda13g01247 | Bda-Chr13:34905529 | 6.72E-63 | dispersed | |
Bda12g00577 | Bda-Chr12:12270133 | Bda04g00804 | Bda-Chr4:57888195 | 1.54E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15840 | PF00847 | AP2 | 1.80E-11 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00804 | - | - | cit:102619724 | 195.282 |