Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00828 ATGGCTGCCGACGTTATTTTCACGGTCAAGGATGATAATCCAATCGGGGCAACTCTAATTGGAAGGGCATACGTACCAGTCCAAGAAATCTTAGATGGGCAAGAAGTCGATAAATGGGTTGAAATCTTAGACAATGACAAAAACCCTATCCATGGAAATTCCAAAATTCATGTCAAGCTTCAATATTTTGATGTCTCTGAGGATCGATGTTGGGGTCGGGGGATTAAAAGTGCAAAATATCCAGGAGTTCCTTACACGTTTTTCTCTCAGAGACAAGGATGTAAGGTCTCTTTGTACCAAGATGTTCACATTCCCGATGGTTTCGTTCCTAAAATCCCGCTTGCGGGTGGGAAGTTTTACGAGCCTCACCGATGTTGGGAAGATGTTTTTGATGCGATAAACAATGCAAAGCACCTCATCTACATTACGGGTTGGTCTGTTTATACGAAAATTACTCTAATTAGGGACTCGAGGAGGCCTAAACCGGGTGGAGATATCATTCTTGGAGACCTACTAAAGAAGAGAGCAAGTGAAGGTGTTAGAGTTCTTATGCTTGTTTGGGATGATAGAACTTCTGTCCCTATACTCAAAAAAGATGGATTGATGGCCACTCACGACGAAGAAACCGAACATTTCTTCGATAATAGTGAGGTGCATTGTGTCCTCTGCCCTCGGAATCCCGATGATGGTGGAAGCATAATTCAAGATTTGCAAATCTCTACTATGTTCACTCATCATCAAAAGATTGTCGTGGTGGATAGTGCTATGCCGAGCGAAGGATCGGAAAAAAGGCGAATTGTGAGTTTTGTTGGCGGAATCGATCTTTGCGACGGAAGATATGATACGCCGTTCCATTCGCTTTTCAGGACGTTGGATACGGCCAATCACGACGATTTTCACCAGCCGAACTTTGCCGGGGCTACGATCGCTAAAGGAGGGCCTAGAGAGCCTTGGCACGATATTCACTCCCGGCTCGAAGGGCCCATCGCGTGGGATGTCTTGTTTAATTTTGAGCAGAGATGGAGGAAGCAAGGCGGGAAGGATATTCTTCTTCAACTGAGGGATATGGAGGAAATATTCATCCCACCTTCTCCGGTTATGTTCCCGGATGATCGTGAAACTTGGAACGTTCAGTTGTTTCGGTCCATTGACGGGGGGGCTGCGTTTGGCTTTCCTGAAAAACCAGAAGATGCCGCAAGAGCCGGACTTGTCAGCGGGAAAGATAATATCATCGATAGAAGCATTCAAGATGCGTATATAAACGCGATTAGGCGTGCCAAAAATTTTATTTACATTGAAAATCAGTATTTCTTGGGGAGCTGTTTTGGTTGGAGCCCTGATGATATCAAGCCTGAAGACATTGGAGCTCTGCATCTGATTCCAAAGGAGCTTTCCATGAAGATTGTTAGTAAGATTGAAGCGGGAGAGAGATTTTCGGTTTATATTGTTGTCCCTATGTGGCCGGAGGGAATGCCGGAAAGTGGATCAGTTCAGGCCATATTAGATTGGCAGAGGAGGACGTTGGAGATGATGTACAAAGATATAACTCAGGCGTTAAACGCAAAGGGTATCGAGGAAGACCCTCGAAACTATTTGACGTTCTTCTGCCTCGGAAATCGCGAAGTTAAGAAGCCGGGCGAGTATGAACCTTCAGAAAAACCAGAGGAGGATACAGATTATATGAGAGCTCAGCAGGCTAGGCGATTCATGATTTATGTTCATGCCAAGATGATGATCGTGGACGATGAGTACATAATCATCGGCTCGGCCAATATCAACCAAAGGTCGATGGATGGAGCAAGAGACTCTGAGATAGCCATGGGGGCCTACCAGACGTGTCATCTGTCTACCCACGTCCCGGCTCGTGGGCAAATCCATGGTTTTAGAATGTCGTTATGGTACGAACACCTCGGAATGCTCGACGATTGCTTCCTTCAGCCCGAGAGTGAAGAATGTGTGAAGAAGGTGAACCACATTGCCGACAAGTACTGGGATCTCTACTCCAGCGAGACTCTGGAGCATGACCTGCCCGGCCACCTCCTACGTTATCCGATCGGAGTTTCCGGCGAAGGAGAAGTCACGGAGCTGCCCGGATTCGAGCACTTTCCGGACACTAAAGCTCGAGTGCTTGGAACCAAATCCGACTATCTCCCTCCCATTCTCACCACCTAG 2172 46.69 MAADVIFTVKDDNPIGATLIGRAYVPVQEILDGQEVDKWVEILDNDKNPIHGNSKIHVKLQYFDVSEDRCWGRGIKSAKYPGVPYTFFSQRQGCKVSLYQDVHIPDGFVPKIPLAGGKFYEPHRCWEDVFDAINNAKHLIYITGWSVYTKITLIRDSRRPKPGGDIILGDLLKKRASEGVRVLMLVWDDRTSVPILKKDGLMATHDEETEHFFDNSEVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSAMPSEGSEKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTANHDDFHQPNFAGATIAKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLQLRDMEEIFIPPSPVMFPDDRETWNVQLFRSIDGGAAFGFPEKPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHLIPKELSMKIVSKIEAGERFSVYIVVPMWPEGMPESGSVQAILDWQRRTLEMMYKDITQALNAKGIEEDPRNYLTFFCLGNREVKKPGEYEPSEKPEEDTDYMRAQQARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQTCHLSTHVPARGQIHGFRMSLWYEHLGMLDDCFLQPESEECVKKVNHIADKYWDLYSSETLEHDLPGHLLRYPIGVSGEGEVTELPGFEHFPDTKARVLGTKSDYLPPILTT 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 58155369 58157621 - Bda019830.1 Bda04g00828 5850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00828 723 Gene3D C2 domain 1 70 IPR035892 -
Bda04g00828 723 Gene3D Endonuclease Chain A 117 358 - -
Bda04g00828 723 PANTHER PHOSPHOLIPASE D 1 723 IPR015679 -
Bda04g00828 723 Gene3D Endonuclease Chain A 391 611 - -
Bda04g00828 723 SUPERFAMILY Phospholipase D/nuclease 362 653 - -
Bda04g00828 723 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 241 279 IPR001736 GO:0003824
Bda04g00828 723 CDD PLDc_pPLDalpha_2 407 616 - -
Bda04g00828 723 Pfam Phospholipase D Active site motif 570 596 IPR001736 GO:0003824
Bda04g00828 723 Pfam Phospholipase D Active site motif 241 279 IPR001736 GO:0003824
Bda04g00828 723 PIRSF PLD_plant 1 723 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bda04g00828 723 Pfam Phospholipase D C terminal 641 713 IPR024632 -
Bda04g00828 723 PANTHER PHOSPHOLIPASE D ALPHA 1 1 723 - -
Bda04g00828 723 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 65 IPR035892 -
Bda04g00828 723 SMART pld_4 569 596 IPR001736 GO:0003824
Bda04g00828 723 SMART pld_4 241 279 IPR001736 GO:0003824
Bda04g00828 723 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 569 596 IPR001736 GO:0003824
Bda04g00828 723 SUPERFAMILY Phospholipase D/nuclease 72 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00828 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - twl:120010960 1335.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00828 Bda05g00535 CCT
Bda04g00828 Bda05g00535 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00828 Bda-Chr4:58155369 Bda09g01040 Bda-Chr9:40567454 0 dispersed
Bda07g01281 Bda-Chr7:15658298 Bda04g00828 Bda-Chr4:58155369 2.18E-22 transposed
Bda08g00300 Bda-Chr8:3135500 Bda04g00828 Bda-Chr4:58155369 1.54E-11 transposed
Bda10g00858 Bda-Chr10:43057432 Bda04g00828 Bda-Chr4:58155369 0 transposed
Bda10g00782 Bda-Chr10:42226594 Bda04g00828 Bda-Chr4:58155369 0 wgd
Bda04g00828 Bda-Chr4:58155369 Bda05g00535 Bda-Chr5:53046427 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g538 . . Bda04g00828 . . Bpe10g00609 Bma10g00806 . . . . . . . . . . Bhi01g03551 . . . . . . . . . . . . . . . . . . . . . . . Bda05g00535 . . . Bma09g00903 . . . . . . . . . . Bhi09g00028 Tan06g0408 . . . . . . . . . . . . . Csa04g00153 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000683 2 9 4 3 3 3 2 2 3 3 3 3 3 2 3 3 3 5 3 2 3 3 3 3 2 3 3 4 6 4 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00828 Bda_Chr04 FPKM 5.358441 5.663378 14.781911 15.412617 135.055115 147.483444 119.569016 11.7637 12.407613