Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00828 ATGGCTGCCGACGTTATTTTCACGGTCAAGGATGATAATCCAATCGGGGCAACTCTAATTGGAAGGGCATACGTACCAGTCCAAGAAATCTTAGATGGGCAAGAAGTCGATAAATGGGTTGAAATCTTAGACAATGACAAAAACCCTATCCATGGAAATTCCAAAATTCATGTCAAGCTTCAATATTTTGATGTCTCTGAGGATCGATGTTGGGGTCGGGGGATTAAAAGTGCAAAATATCCAGGAGTTCCTTACACGTTTTTCTCTCAGAGACAAGGATGTAAGGTCTCTTTGTACCAAGATGTTCACATTCCCGATGGTTTCGTTCCTAAAATCCCGCTTGCGGGTGGGAAGTTTTACGAGCCTCACCGATGTTGGGAAGATGTTTTTGATGCGATAAACAATGCAAAGCACCTCATCTACATTACGGGTTGGTCTGTTTATACGAAAATTACTCTAATTAGGGACTCGAGGAGGCCTAAACCGGGTGGAGATATCATTCTTGGAGACCTACTAAAGAAGAGAGCAAGTGAAGGTGTTAGAGTTCTTATGCTTGTTTGGGATGATAGAACTTCTGTCCCTATACTCAAAAAAGATGGATTGATGGCCACTCACGACGAAGAAACCGAACATTTCTTCGATAATAGTGAGGTGCATTGTGTCCTCTGCCCTCGGAATCCCGATGATGGTGGAAGCATAATTCAAGATTTGCAAATCTCTACTATGTTCACTCATCATCAAAAGATTGTCGTGGTGGATAGTGCTATGCCGAGCGAAGGATCGGAAAAAAGGCGAATTGTGAGTTTTGTTGGCGGAATCGATCTTTGCGACGGAAGATATGATACGCCGTTCCATTCGCTTTTCAGGACGTTGGATACGGCCAATCACGACGATTTTCACCAGCCGAACTTTGCCGGGGCTACGATCGCTAAAGGAGGGCCTAGAGAGCCTTGGCACGATATTCACTCCCGGCTCGAAGGGCCCATCGCGTGGGATGTCTTGTTTAATTTTGAGCAGAGATGGAGGAAGCAAGGCGGGAAGGATATTCTTCTTCAACTGAGGGATATGGAGGAAATATTCATCCCACCTTCTCCGGTTATGTTCCCGGATGATCGTGAAACTTGGAACGTTCAGTTGTTTCGGTCCATTGACGGGGGGGCTGCGTTTGGCTTTCCTGAAAAACCAGAAGATGCCGCAAGAGCCGGACTTGTCAGCGGGAAAGATAATATCATCGATAGAAGCATTCAAGATGCGTATATAAACGCGATTAGGCGTGCCAAAAATTTTATTTACATTGAAAATCAGTATTTCTTGGGGAGCTGTTTTGGTTGGAGCCCTGATGATATCAAGCCTGAAGACATTGGAGCTCTGCATCTGATTCCAAAGGAGCTTTCCATGAAGATTGTTAGTAAGATTGAAGCGGGAGAGAGATTTTCGGTTTATATTGTTGTCCCTATGTGGCCGGAGGGAATGCCGGAAAGTGGATCAGTTCAGGCCATATTAGATTGGCAGAGGAGGACGTTGGAGATGATGTACAAAGATATAACTCAGGCGTTAAACGCAAAGGGTATCGAGGAAGACCCTCGAAACTATTTGACGTTCTTCTGCCTCGGAAATCGCGAAGTTAAGAAGCCGGGCGAGTATGAACCTTCAGAAAAACCAGAGGAGGATACAGATTATATGAGAGCTCAGCAGGCTAGGCGATTCATGATTTATGTTCATGCCAAGATGATGATCGTGGACGATGAGTACATAATCATCGGCTCGGCCAATATCAACCAAAGGTCGATGGATGGAGCAAGAGACTCTGAGATAGCCATGGGGGCCTACCAGACGTGTCATCTGTCTACCCACGTCCCGGCTCGTGGGCAAATCCATGGTTTTAGAATGTCGTTATGGTACGAACACCTCGGAATGCTCGACGATTGCTTCCTTCAGCCCGAGAGTGAAGAATGTGTGAAGAAGGTGAACCACATTGCCGACAAGTACTGGGATCTCTACTCCAGCGAGACTCTGGAGCATGACCTGCCCGGCCACCTCCTACGTTATCCGATCGGAGTTTCCGGCGAAGGAGAAGTCACGGAGCTGCCCGGATTCGAGCACTTTCCGGACACTAAAGCTCGAGTGCTTGGAACCAAATCCGACTATCTCCCTCCCATTCTCACCACCTAG 2172 46.69 MAADVIFTVKDDNPIGATLIGRAYVPVQEILDGQEVDKWVEILDNDKNPIHGNSKIHVKLQYFDVSEDRCWGRGIKSAKYPGVPYTFFSQRQGCKVSLYQDVHIPDGFVPKIPLAGGKFYEPHRCWEDVFDAINNAKHLIYITGWSVYTKITLIRDSRRPKPGGDIILGDLLKKRASEGVRVLMLVWDDRTSVPILKKDGLMATHDEETEHFFDNSEVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSAMPSEGSEKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTANHDDFHQPNFAGATIAKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLQLRDMEEIFIPPSPVMFPDDRETWNVQLFRSIDGGAAFGFPEKPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHLIPKELSMKIVSKIEAGERFSVYIVVPMWPEGMPESGSVQAILDWQRRTLEMMYKDITQALNAKGIEEDPRNYLTFFCLGNREVKKPGEYEPSEKPEEDTDYMRAQQARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQTCHLSTHVPARGQIHGFRMSLWYEHLGMLDDCFLQPESEECVKKVNHIADKYWDLYSSETLEHDLPGHLLRYPIGVSGEGEVTELPGFEHFPDTKARVLGTKSDYLPPILTT 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 58155369 58157621 - Bda019830.1 Bda04g00828 5850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00828 723 Gene3D C2 domain 1 70 IPR035892 -
Bda04g00828 723 Gene3D Endonuclease Chain A 117 358 - -
Bda04g00828 723 PANTHER PHOSPHOLIPASE D 1 723 IPR015679 -
Bda04g00828 723 Gene3D Endonuclease Chain A 391 611 - -
Bda04g00828 723 SUPERFAMILY Phospholipase D/nuclease 362 653 - -
Bda04g00828 723 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 241 279 IPR001736 GO:0003824
Bda04g00828 723 CDD PLDc_pPLDalpha_2 407 616 - -
Bda04g00828 723 Pfam Phospholipase D Active site motif 570 596 IPR001736 GO:0003824
Bda04g00828 723 Pfam Phospholipase D Active site motif 241 279 IPR001736 GO:0003824
Bda04g00828 723 PIRSF PLD_plant 1 723 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bda04g00828 723 Pfam Phospholipase D C terminal 641 713 IPR024632 -
Bda04g00828 723 PANTHER PHOSPHOLIPASE D ALPHA 1 1 723 - -
Bda04g00828 723 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 65 IPR035892 -
Bda04g00828 723 SMART pld_4 569 596 IPR001736 GO:0003824
Bda04g00828 723 SMART pld_4 241 279 IPR001736 GO:0003824
Bda04g00828 723 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 569 596 IPR001736 GO:0003824
Bda04g00828 723 SUPERFAMILY Phospholipase D/nuclease 72 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00828 Bda05g00535 CCT
Bda04g00828 Bda05g00535 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00828 Bda-Chr4:58155369 Bda09g01040 Bda-Chr9:40567454 0 dispersed
Bda07g01281 Bda-Chr7:15658298 Bda04g00828 Bda-Chr4:58155369 2.18E-22 transposed
Bda08g00300 Bda-Chr8:3135500 Bda04g00828 Bda-Chr4:58155369 1.54E-11 transposed
Bda10g00858 Bda-Chr10:43057432 Bda04g00828 Bda-Chr4:58155369 0 transposed
Bda10g00782 Bda-Chr10:42226594 Bda04g00828 Bda-Chr4:58155369 0 wgd
Bda04g00828 Bda-Chr4:58155369 Bda05g00535 Bda-Chr5:53046427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00828 K01115 - twl:120010960 1335.47