Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00879 ATGGCGTTTCTTATGGGCGTTTGCTTCCTGCTTGCTGCAACTTCCTCCATTGTTGAAGCTTCGTTTGAGTTCAAAGTTGGTGATTCTTCGGGTTGGCAAGTTCCTGATGAAAACGACGCTGGTTTTTACAATCGTTGGGCAGAAATGAACAGATTCCAAATCGGAGATTCTCTTGATTTCGAGTACACCAACGATTCTGTCCTTGTGGTGGACAAATGGGATTATTACCACTGCAACACAAGCGACGCCATAGCTGAATTCGACAATGGAAAGACTGTAATCCAGCTGGACAGGTCAGGCCCTTTCTACTTCATCAGCGGGGAGACAGATCACTGCAAAAAGGGCCAGCGAATGATAGTGGAGGTGATGTCCCAACATCCTCCGTCGCCGCCCGCCATCGCAGCTCCGCCGTATCCTTTCTCCACGTTGTCTCCTTCACCCTCACCATCTCTGAGCTCCGGCGATCGAGTTTCCGCCTCTTGCAGTCTAGTCTCTGTAGTTCTTGCTGTCTCATTCGGAGCCTTAGCACTCTCTTCAGATTAA 543 49.54 MAFLMGVCFLLAATSSIVEASFEFKVGDSSGWQVPDENDAGFYNRWAEMNRFQIGDSLDFEYTNDSVLVVDKWDYYHCNTSDAIAEFDNGKTVIQLDRSGPFYFISGETDHCKKGQRMIVEVMSQHPPSPPAIAAPPYPFSTLSPSPSPSLSSGDRVSASCSLVSVVLAVSFGALALSSD 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 58578570 58579213 - Bda019887.1 Bda04g00879 5901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00879 180 PANTHER BLUE COPPER PROTEIN 6 166 IPR039391 GO:0009055
Bda04g00879 180 Gene3D - 22 132 IPR008972 -
Bda04g00879 180 PANTHER EARLY NODULIN-LIKE PROTEIN 2 6 166 - -
Bda04g00879 180 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Bda04g00879 180 CDD OsENODL1_like 22 123 IPR041846 -
Bda04g00879 180 Pfam Plastocyanin-like domain 32 116 IPR003245 GO:0009055
Bda04g00879 180 ProSiteProfiles Phytocyanin domain profile. 22 124 IPR003245 GO:0009055
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00879 Bda12g00590 CCT
Bda04g00879 Bda10g00828 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00879 Bda-Chr4:58578570 Bda13g01640 Bda-Chr13:39873479 1.08E-34 dispersed
Bda10g00828 Bda-Chr10:42676791 Bda04g00879 Bda-Chr4:58578570 3.09E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00879 - - qsu:112010402 177.178