Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00884 ATGGATAGGACGGAAGATATGAAGTTTTCAGCCTCGCAGTCCAACAATTCTCATACAGATGGGGAAGAGGGAGATAATATTGAAGCTCGATTCTCAGATTTTTGCAAGAACGGGCTCTCTCTTGATGACAACTCTCATGCTCAAGCTTTGAAGCTCTTCGGGGAAACTAAACACGTCCTTTTGACAGCTATGACAGCTATAGGGAGCGGAGCACTTGAAGAAGCAGAGCAGTATTGGTTTGCATTTATTTTATACTCTGTGAAAAGGTTGAGCGAAATTAATGCAGATAGTCCACAGCATGGATCTGATGAAAGTGGGTTGAACTTATGCCACATTTTAAGGAAAGCAAAGCTGAACATTGTCGATTTTTTCAAAGAGTTGCCTCAATTTGTTGTAAAGGCAGGTCCTATTTTAAGTAGAATGTATGGTTCAGATTGGGAAAGTAGACTTGAGGCAAAGGAGTTGCAAGCTAATTTTGTTCACCTGAGTATTTTAAGCAAGTACTATAAACGTGTATACCAGGAATTCTTCACTATCGATGCTAATGCCGATAAGCAGCCAACTACTCTCAGTTCCCTAGGTTATGTTTCAGACTACCAACAATTTGGATGGTTGCTATTTTTGGCACTCCGAGTACACGCATTTAGCAGTTTCAAAGACTTAGTGACTTGCACCAATGGCCTACTTTCTATTTTGGCTATCTTGATAATTCACCTTCCTGTCCGATTCAGAAACTTCAACATACTTGAATCTCAACGTTTTGTTAAGAAAGGCAATGGTGGAATAGACCTGATTGGATCACTTTGCAACCTGTATGAAACCTCAGAAGAAGAATTGAGGAAAACAATGGAAAAGGCTAATAATCTGATTGAAAACATTTTGAAGAAGAAATCATGTCCAGCTTCTGAATGTTCTAGTGAATGTCTGAAGAATATTGATACAGATGGTTTGACGCACTTTGAAGATCTGATGGAGGGATCATCTTTATCATCGAGTTTAGATATTTTAGAGAAGGATTATGAAAATGCAGTTCGGAATAAGGGTGAACTTGATGAGAGAGTATTCATCTATGAAGAAGACAGCTTACTTGGTTCAGGAAGTTTGTCTGCGGGTGCCACTAATATAATTGGTGTCAAGAGAAAGTTTGATTTAATGGCATTGCCTGCTAGGACAATAGCAAGCCCTCTGTCTCCTCTTCGATCCCCTGCTTCTCATGCCAATGGTATTCACGGAGTTGCTAACTCTAAGATGGCAGCCACACCAGTAAGCACAGCAATGACAACAGCAAAGTGGCTACGTACTGTTATTTCTCCACTTCTAGCTAAACCCTCAGCTGAGTTAGAGCACTTTCTGGCTTCTTGTGATAGAGATGTAACTAATGACGTATTTCGTAGGGCACTTATTATATTAGAGGCCATATTTCCTATTAGTTCTCGTGGAGATCATTGTATAGCTAGTAACTTACATAGTGCAAACCTCATGGACAACATTTGGGCCGAGCAACGAAGACTAGAAGCACTGAAGTTATATTACCGAGTTTTGGAAGCAATGTGCAGAGCAGAGGCTCAAATATTGCATGCGAATAATTTGACCTCTCTACTAACCAATGAGAGGTTCCATAGGTGTATGTTGGCCTGTTCTGCCGAACTTGTTCTGGCAACACACAAAACTGTTACGATGTTGTTTCCTGCAGTTTTGGAAAGGACTGGCATTACAGCCTTTGATCTTAGCAAGGTGATAGAGAGTTTCATAAGACATGAAGAATCTCTTCCAAGAGAATTGAGGCGACACTTGAATTCATTGGAAGAACGACTGTTGGAGAGTATGGTGTGGGAAAAGTGTTCATCAATGTATAATTCTTTGATAGTTGCAAAACCAGGTCTTACGACAGAAATAAACCGTCTAGGGTTTTTAGCAGAACCGATGCCATCTTTGGATGCTATTGCATTGCTCATAAACTTTTCTGGTGTTGGGTTGCCCCCTGTGCTTAATTTACAAAAGCATGAGATTGTCCTAGGACAGAATGGAGATATTAGGTCTCCAAAAAGATTGTGCCTAGATTATCGAAGTGTGTTAGTGGAGCGAAAATCCTTTACTTCTCCAGTGAAGGAGCGACTAATGGGCTTTAGTAACCTTAAAGCAAAGTTACTGCCACCTCCTTTACAGTCCGCCTTTGCGAGTCCTACACGTCCTAATCCTGGAGGTGGAGGGGAAACATGTGCCGAAACTGGAATTAACATATTCTTTAGCAAAATTGTTAAGCTGGCTGCGGTTAGAATCAGTGGTATGGTTGAAAGGCTGCAACTTTCTCAACAGATACGAGAGAATGTCTACTACCTTTTTCAACAAATCCTTAATCAGAAGACTTCACTTCTTTTCAATCGTCACATTGACCAGATCATCCTTTGCTGTTTCTATGGCATTGCAAAGATTTCTCAATTAAATTTGACATTTAAAGAAATCATTTACAACTATAGGAAGCAACCACATTGCAAAACACAAGTTTTTCGCAGTGTTTTTGTTGATTGGTCGTTGGCTCGCCGTAACGGAAGAACCGGTCAGGATCATGTTGATATAATCACATTCTATAATGAAATGTTCATCCCTGTTGTGAAACCTCTGCTGGTTGAGATTGGCCCTGCTGGTCCTACTACAAAAGCTAATAGAGTTCCTGAGGGTTCCAGCAATAATGATGCACCATGTCCTGGATCGCCGAAAAGATCTCCTTTCCCAAGTCTTCCTGATATGTCTCCCAAAAAAGTTTCTGCTGCACATAATGTATACGTCTCTCCGTTAAGATCATCAAAGATGGATGCCTTAATTTCACACAGCTCCAAAAGCTATTATGCTTGTGTAGGAGAGAGTTCTCATGCATATCAGAGCCCTTCAAAAGACTTGACTGCCATAAACAACCGCTTAAATGGGACTCGGAAGCTCCGTGGAACGCTCAATTTTGACGATGTAGATGTTGGTTTGGTGAGTGATTCAATGGTCGCCAACAGCCTTTACCTTCAAAACGGGAGCTGTGCATCTTCGTCGGGCACGCCAATTAAACCAGAACAACCTGACTCCTGA 3075 41.07 MDRTEDMKFSASQSNNSHTDGEEGDNIEARFSDFCKNGLSLDDNSHAQALKLFGETKHVLLTAMTAIGSGALEEAEQYWFAFILYSVKRLSEINADSPQHGSDESGLNLCHILRKAKLNIVDFFKELPQFVVKAGPILSRMYGSDWESRLEAKELQANFVHLSILSKYYKRVYQEFFTIDANADKQPTTLSSLGYVSDYQQFGWLLFLALRVHAFSSFKDLVTCTNGLLSILAILIIHLPVRFRNFNILESQRFVKKGNGGIDLIGSLCNLYETSEEELRKTMEKANNLIENILKKKSCPASECSSECLKNIDTDGLTHFEDLMEGSSLSSSLDILEKDYENAVRNKGELDERVFIYEEDSLLGSGSLSAGATNIIGVKRKFDLMALPARTIASPLSPLRSPASHANGIHGVANSKMAATPVSTAMTTAKWLRTVISPLLAKPSAELEHFLASCDRDVTNDVFRRALIILEAIFPISSRGDHCIASNLHSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKCSSMYNSLIVAKPGLTTEINRLGFLAEPMPSLDAIALLINFSGVGLPPVLNLQKHEIVLGQNGDIRSPKRLCLDYRSVLVERKSFTSPVKERLMGFSNLKAKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIVKLAAVRISGMVERLQLSQQIRENVYYLFQQILNQKTSLLFNRHIDQIILCCFYGIAKISQLNLTFKEIIYNYRKQPHCKTQVFRSVFVDWSLARRNGRTGQDHVDIITFYNEMFIPVVKPLLVEIGPAGPTTKANRVPEGSSNNDAPCPGSPKRSPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESSHAYQSPSKDLTAINNRLNGTRKLRGTLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGTPIKPEQPDS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 58607882 58614511 - Bda019892.1 Bda04g00884 5906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00884 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634|GO:0051726
Bda04g00884 1024 Gene3D - 710 898 - -
Bda04g00884 1024 MobiDBLite consensus disorder prediction 1 25 - -
Bda04g00884 1024 Pfam Domain of unknown function (DUF3452) 102 238 IPR024599 -
Bda04g00884 1024 Coils Coil 272 296 - -
Bda04g00884 1024 PANTHER BNACNNG22930D PROTEIN 23 1011 - -
Bda04g00884 1024 Gene3D - 423 611 - -
Bda04g00884 1024 MobiDBLite consensus disorder prediction 888 902 - -
Bda04g00884 1024 MobiDBLite consensus disorder prediction 885 917 - -
Bda04g00884 1024 Coils Coil 333 353 - -
Bda04g00884 1024 SMART cyclin_7 758 876 IPR013763 -
Bda04g00884 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634|GO:0051726
Bda04g00884 1024 SUPERFAMILY Cyclin-like 743 912 IPR036915 -
Bda04g00884 1024 SMART DUF3452_2 90 238 IPR024599 -
Bda04g00884 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634|GO:0051726
Bda04g00884 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 1011 IPR028309 GO:0006357|GO:0051726
Bda04g00884 1024 Gene3D - 199 356 - -
Bda04g00884 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00884 Bda-Chr4:58607882 Bda15g00106 Bda-Chr15:3314650 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15844 PF01858 RB_A 2.10E-62 CL0065 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00884 K04681 - csv:101219810 1570.44