Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00930 ATGATGAAAAATGGGTGTCCTTTCACTTCAGCTCAATGGCAAGAGCTTCAGCACCAATCGTTGATCTTCAAATACATGGTGACTGGATCTCCGATTCCCACCGATCTCATTTCTTCACTCAGAAGAAGCTTCGACTCCTCAGTTTCTTCCAAACTTTTCCCTCGCCACCCCATTGGGTGGGGATGTTATGAGATGGGTTGTGGTAGGAAAGCAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGCTCAAAAGAAGCATACCCAGATTCAAAGTACTGTGAAAGGCATATGCATCGAGGCAGGAATCGTTCAAGAAAGCCTGTGGAAGCTTCTTCGACTTCATCATCTCCTTCTCCACCCATTTCATCAGCAAACAACATCTCCATTTTCAATCCCACAACCTATTCTTCCTCTCTCTCTTTGTCTCCATCTCTCCCCTCTCCACAAACACTCTCATTCCACAGCCATTGTCGTGATTCAGCTCTTCATCACTTGCTTCATCCTCTTTCTCCTCCTCCTAATCCCCCTCTTACTGCATTTTCATCTCACAGCTCCACTCAAAACTTTTTGCGTTCGGGATTGAGCAGAGATCACAGGCAAGTGGGTTTTGGCAGGTATGATCATGGAACAAGGGATGGCCGAGATGAACAAGCTTTTTTCCCAGAAACTTCAGGTGTGGGAGGGAACTTAGCAGAGCCATATCCGCCATTAACCATGAACTCTTGCCATCAATCACTTCAAAACCTTGATCAGAATAATACCAAAGAGCAGAGACAACAAGAGCAGCATTGCTTCATTTTAGGAACAGATTGTCAATCACCGAAACAAGTTAAACCAGACAAGGAAACGGAAACCCATAAGCCACTTCACCATTTCTTTCATGACTGGCCAATAAAGAAGACAGAATCATGGCTTGATCTTGCCTTCAATTCAAGTAAGCAAAAGCTATGGCTTCTCTTTTACTTCTAG 987 44.78 MMKNGCPFTSAQWQELQHQSLIFKYMVTGSPIPTDLISSLRRSFDSSVSSKLFPRHPIGWGCYEMGCGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEASSTSSSPSPPISSANNISIFNPTTYSSSLSLSPSLPSPQTLSFHSHCRDSALHHLLHPLSPPPNPPLTAFSSHSSTQNFLRSGLSRDHRQVGFGRYDHGTRDGRDEQAFFPETSGVGGNLAEPYPPLTMNSCHQSLQNLDQNNTKEQRQQEQHCFILGTDCQSPKQVKPDKETETHKPLHHFFHDWPIKKTESWLDLAFNSSKQKLWLLFYF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 59084763 59085895 - Bda019937.1 Bda04g00930 5952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00930 328 MobiDBLite consensus disorder prediction 185 200 - -
Bda04g00930 328 MobiDBLite consensus disorder prediction 170 219 - -
Bda04g00930 328 MobiDBLite consensus disorder prediction 113 131 - -
Bda04g00930 328 Pfam WRC 73 115 IPR014977 -
Bda04g00930 328 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda04g00930 328 MobiDBLite consensus disorder prediction 204 219 - -
Bda04g00930 328 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda04g00930 328 PANTHER GROWTH-REGULATING FACTOR 5 3 321 - -
Bda04g00930 328 PANTHER - 3 321 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bda04g00930 328 Pfam QLQ 7 39 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda04g00930 328 ProSiteProfiles WRC domain profile. 72 116 IPR014977 -
Bda04g00930 328 MobiDBLite consensus disorder prediction 99 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00930 - - - qlo:115988876 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00930 Bda-Chr4:59084763 Bda11g01020 Bda-Chr11:9965409 5.97E-54 dispersed
Bda02g00370 Bda-Chr2:44103075 Bda04g00930 Bda-Chr4:59084763 4.66E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g99 Blo05g00042 . Bda04g00930 . . . . . . . Cma01g00034 Cma14g01236 Car01g00027 Car14g01092 . . . Bhi01g02800 Tan04g2799 Cmetu04g2587 Lac12g2484 Hepe02g1533 . . Cla07g01338 Cam07g1156 Cec07g1527 Cco07g1484 Clacu07g1409 Cmu07g1384 Cre07g1767 . . . . . . Chy04g00698 . . . . . . . Bma09g00981 . . Cmo01g00038 Cmo14g01265 . . . . Cpe02g01745 Cpe03g01046 . . . . . . . . . . . . . . Lsi07g00619 . . Cme04g01295
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00930 . 7 106 GRF Transcription Factor Family AT3G13960 72.0 1.4e-43 174.1
Bda02g00370 CCT,ECH 6 106 GRF Transcription Factor Family AT3G13960 70.9 4.1e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15848 PF08879 WRC 1.70E-21 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00930 Bda_Chr04 FPKM 8.201278 6.541495 8.954392 7.448272 4.855853 3.522519 3.337243 7.077685 6.176496