Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00948 ATGTGCGGAGGTGCTATTATCTCCGATTTCATTCCCCCCGCTCGCTCCAGGCGGGTCACCGACGCGCATCTCTTCCCTGATCTCAACAAACTCACTTCCTGGAAACGCTCGAAGAAGCCTCCGAGGTCCGAGTTGATCCTCCTAGCCGATGATTTCGAGGCTGATTTTCAAGACTTCAAGGATGATTTTGATGCTGATCTTTATCAAGCCGAGGACTTGGACATCAACACCTTCTCTTTCTCCTCTCCTGCTCCTTCCTTCTCTTCCGCTAGGGGTAATAAACTCAAAAATCCAAGGAATTCAGCGGCCAAGCCAGAGAAATGCGCCAAGAGAAAGAGGAAGAACAAATACAGGGGAATTCGACAGCGTCCATGGGGCAAGTGGGCGGCTGAGATTCGTGATCCGAGGAAAGGAGTTCGCGTGTGGCTTGGCACATTCAACACTGCAGAAGAAGCAGCAAGAGCATACGATGCTGAGGCTCGTAGAATTCGCGGCAACAAAGCAAAGGTGAATTTCACACAGAAGCTCCAAAAACTTGTCGAAATTCCTCAGCAAATGCAAATCAGATCCAGAGCTTCGATGTTGTCAAAATTCATGATCAAGACTGCTACGATTATCCAATTTATACTGGAAGAGAAACCACAGATTAACCAACCTGATGATATTCCACTCTTCTTCAACTCGGACGAAGGCACCAAGTCCTTCAGTCCGAGCGAAGATGGCCTTTTGATGGAGGCAGCCTATCCAAGTAAGAAGCAGAAATCTATGTCTGGAGAAGGAGGCGCCGGAGAGACACACTCGAATTTTTATATGATAGGAAGAGACAAGAACAGAACATTTTGGAAAGTGTTGAAGATCAGCAGAGAGGAGCTCAGTGATTTAAGCATTCTTGAAGATTCTGCCACGTACACAGATAATGAGTGCTTTGAGCTACTGAAACGGATTCATGAAGGAAACAAGTCAACTGGAGGACTTAAATTTGTTTCCACTTGCTATGGAATTGTCGGTATAGTCAAATTTCTCGGACCTTATTACATGCTGCTGATAACAAAAAGAAGGAAAATAGGTTCAATATGTGGGCATGCAATTTATGCAATTACCAAAAGCGAGATGATACCCATTCCGAATGCTTTAGTGCGATCCAAAATGGCTAATTCTAAGGATGAGAACAGATACAAGAAGCTCCTATGCTCAGTGGATCTTAGGAAAGACTTCTTTTTCAGCTACTCATACTATGTCATCCGTAGTCTTCAAAAGAACTTATGTGATTGTAAGACAGGGCATTTTCTCTATGAAACAATGTTTGTTTGGAATGAGTTCTTAACTCGTGGAATCCGGAATACTCTCAATAATACGATCTGGACAGTTGCACTGGTGTATGGGTATTTCAAACAGGTTGATCTCTCCATATCCAGCAAGAATTTCAGTTTGACCATCATGGCTCGACGATCACGGCATTATGCTGGCACTAGGTATTTGAAACGAGGAGTGAATGAAAAAGGAAGAGTAGCGAATGATGTTGAAATAGAACAGATTGTTTTTGAAAATACTACGGATGGACAACCAATTCAGATAAGTTCCATTGTCCAAAATCGTGGTTCGATCCCCCTTTTCTGGTCCCAAGAAACCTCACGAATGAACATTAAACCTGACATCATATGTACGTCCGTTCTTCTGACTCTCATGAAATGTTCTCTTTTTTCACAACCTGTCTTTCTTCCTCTAGTATCAAAAAAGGATCATAGCTATGAAGCTACACGACTACATTTTGAGAATCTTGTGAATAGATATGGGAATCCAATAATTATTTTGAACTTGATTAAGACGCATGAAAAGAAGCCAAGAGAGACTATTCTGCGTAATGAGTTTGCAAATGCTATAAGATTTATCAATAATGGATTAACAGAGAGGAACCGCCTAAGATTTCTTCACTGGGATCTGAATAAACACTCCAGAAGCAAAGCTACTAATGTTTTGGCTCAGCTTGGAAGAGTTGCTACATATGCATTGAACTTGACGGGTATCTTTCACTGTCAAATGACATCGAATTCAAGCATCGAGGGGTTGCTTAGTCGGTCATGCTTAAAGAAAAGTAGTAGTGTTGATTGCTCTCTAGAAGACCTGTCGATTAAAAATGAGGATGCGGAAGGCCCAGGAGTTCAAGCTGACAATAGTCATTGTGGTGATAGTGAGAATGGAGATTTTACAATTGGCCCCTTAATGTTTCAGAGTGGAGTGCTAAGGACCAATTGCATAGATTGTTTGGACCGCACAAATGTTGCCCAATATGCCTATGGGTTAGTTGCTCTTGCGCGTCAGCTGCATGCCTTAGGACTTACAGAGTCTCCTAATATTGATCTGGATAGCATGTTAGCAAAAGATTTGATGGAAATGTACGAAAATATGGGTGACACTCTTGCACTACAATATGGTGGTTCTGCCGCACATAATAAGATATTTTCTGAAAGAAGGGGTCAATGGAGACCAGCGACGCAATCCCAAGAGTTCTTCAGAACACTACAACGGTATTATAGCAATGCGTATGTGGATGCTGAGAAACAAAATGCCATTAATGTGTTCCTTGGGTACTTTCAGCCACAGCCGGGTAAACCAGCACTATGGGAACTGGACTCAGATCAACATTACAATATTGGCAAACTTCCAAATGATGAGAATCATAGGACCATTAAACGATCACTATCAGATGGAAACATTCTTAGAGAATGCGAGTCTTGTTTGGAAAACTTAGATGATAGACGCAATCAGCCTTTTTCTGCAACACCTCAGGGATGTGAGAGAGGCATTTCAGAATCTTCTCCCGAGATCTCAGCTTCTAGAACTGAGATTTCTAATTACAGGTATACTCCTTCAGTGTGCAGCAGAAAGCTTTTTGGAGATGCTCAAGAGGATCAATGGTCTGAGATTGACCACATTTGTCATGATAAACATGGGGACTTGTGCAACTGCTCTAATTTTTTGGATGTGGACTGGCTTTCTTCATCTGGAAATTCTTGTGAAGATGAATTATGCGGAAGGTCTATTGCCAGTATATCATCAGATAATGTAGCAAATGATCTAAAAACGGAAATGACCCCATCTGCTAGTGAGTCCGGTTCCAGCATGAAGGCAAGAGAGCAGACTGCTCCCGAGCTCCTTCGTTCCACCGACATCCTCAACAAATACTCGGAAGACTTTGTGGATTGGAATTTTTACTTGGTGGGAAGAGGAAAGGACAAGTCTTTATGGAAAGTGATGAAGATTGACAGGATGGAGCCTTCTGAGCTGCACATTTATGAAGACTCGGAAGTATACTCGGCAAAGGAGTGCTCCGAATTGCTACAGCGGCTACACGAAGGAAATAAGTCAATGGGTGGGCTTAAATTACTCACAATTTGCTATGGAATCGTCGGCTTTGTAAAGTTTCTGGAACCATATTACATGCTGGTTATAACTGAGAGAAAGAAGATGGGTGCAATATTAGGAGAAAAAATATACGGTATCGCCCGGAGCAAGATGATTGCGATTCCCAATCCGGCCGTGCTATCCGAAAAGGCTTATTGCCGCGAAGAGAACAGATATAAGAAGCTCCTCAACATGGTGGACCTCACCAAGGACTTCTTTTTCAGTTATTCTTATCACATCATGGATAGCCTTCAGAAGAATGTGGCCGATTACAAGACGGGACAGTTCGTTTACGAAACGATGTTTGTGTGGAATGAGTTCCTCACTCGTGATATCCGGAAGAGGCTCGAGAATACACGCTGGACAGTCGCCTTAGTCTATGGATTCTTTAAACAGATCAAACTTCGCGTACCTCGTAGGAACCTCAACTTGATCCTCATTGCTCGACGCTCCCGTCACTATGCTGGCACCAGGTTTTTAAGACGAGGAGTCAATGAAAGTGGTAGAGTCGCTAACGATGTCGAGACAGAACAAATTGTTTTCGAGGAGTCAGCCGATGGACTGCCAAAGCAGGATGATTATAAAGCCACAAAACTTCATTTCAAGAATCTTGTATACAGATATGGAAATCCAATTATTATCTTGGATTTGACTAAGACCCGGGAGAAGATACCTCGAGAAACTATTCTTCGTACGGAGTACGCCAATGCAATTGGATGCATCAATGCTGACTACTCAGAGAAAAGCCGGCTAAAGTTTCTTCAATGGGATCTAAAGCAACATTCAAGAAATGAAGCCACCTTTGTTCTCAAACAGCTGATACAATTGACGACCGTTGCATTAAAGTTAACGGGCATATTCTTCGGCAAAGCAATACCGAAGTTATTGTTAGAAGTGAACGAGAATGGTTGTAAGGTTGAAGTAGAGATTGGTCACAGTGTAAGTGGGAACAATTGTGTCTCCCCACTGATGCTTCAAAATGGTGTCCTCAGGACCAATTGCATCGACTGTTTGGACCGCACAAATTTTGCTCAGTATGCATATGGGATTTCTGCTCTCGGGCATCAGCTTAAAGCTTTTGGAATTATAGAGTCGTCGGGTATAGGCGTCGATGACCCTTTGGCGAGGGACTTAATGTCGACTTATGAAATTATGGGGGACAAACTTGCGCTGCAGTATGGGGGCTCTCCGGCACACAATAAGATATTTTGTAAGATAAGAGATGAATGGCAACCGGCAATCGAGTATCTGGACATAATTAAAACCGTGCAACGTTTTGTAAGTAATGCGTATAAAGATTCTGAGAAGCAGAATGCTATAGATGTGTAA 4731 42.65 MCGGAIISDFIPPARSRRVTDAHLFPDLNKLTSWKRSKKPPRSELILLADDFEADFQDFKDDFDADLYQAEDLDINTFSFSSPAPSFSSARGNKLKNPRNSAAKPEKCAKRKRKNKYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFTQKLQKLVEIPQQMQIRSRASMLSKFMIKTATIIQFILEEKPQINQPDDIPLFFNSDEGTKSFSPSEDGLLMEAAYPSKKQKSMSGEGGAGETHSNFYMIGRDKNRTFWKVLKISREELSDLSILEDSATYTDNECFELLKRIHEGNKSTGGLKFVSTCYGIVGIVKFLGPYYMLLITKRRKIGSICGHAIYAITKSEMIPIPNALVRSKMANSKDENRYKKLLCSVDLRKDFFFSYSYYVIRSLQKNLCDCKTGHFLYETMFVWNEFLTRGIRNTLNNTIWTVALVYGYFKQVDLSISSKNFSLTIMARRSRHYAGTRYLKRGVNEKGRVANDVEIEQIVFENTTDGQPIQISSIVQNRGSIPLFWSQETSRMNIKPDIICTSVLLTLMKCSLFSQPVFLPLVSKKDHSYEATRLHFENLVNRYGNPIIILNLIKTHEKKPRETILRNEFANAIRFINNGLTERNRLRFLHWDLNKHSRSKATNVLAQLGRVATYALNLTGIFHCQMTSNSSIEGLLSRSCLKKSSSVDCSLEDLSIKNEDAEGPGVQADNSHCGDSENGDFTIGPLMFQSGVLRTNCIDCLDRTNVAQYAYGLVALARQLHALGLTESPNIDLDSMLAKDLMEMYENMGDTLALQYGGSAAHNKIFSERRGQWRPATQSQEFFRTLQRYYSNAYVDAEKQNAINVFLGYFQPQPGKPALWELDSDQHYNIGKLPNDENHRTIKRSLSDGNILRECESCLENLDDRRNQPFSATPQGCERGISESSPEISASRTEISNYRYTPSVCSRKLFGDAQEDQWSEIDHICHDKHGDLCNCSNFLDVDWLSSSGNSCEDELCGRSIASISSDNVANDLKTEMTPSASESGSSMKAREQTAPELLRSTDILNKYSEDFVDWNFYLVGRGKDKSLWKVMKIDRMEPSELHIYEDSEVYSAKECSELLQRLHEGNKSMGGLKLLTICYGIVGFVKFLEPYYMLVITERKKMGAILGEKIYGIARSKMIAIPNPAVLSEKAYCREENRYKKLLNMVDLTKDFFFSYSYHIMDSLQKNVADYKTGQFVYETMFVWNEFLTRDIRKRLENTRWTVALVYGFFKQIKLRVPRRNLNLILIARRSRHYAGTRFLRRGVNESGRVANDVETEQIVFEESADGLPKQDDYKATKLHFKNLVYRYGNPIIILDLTKTREKIPRETILRTEYANAIGCINADYSEKSRLKFLQWDLKQHSRNEATFVLKQLIQLTTVALKLTGIFFGKAIPKLLLEVNENGCKVEVEIGHSVSGNNCVSPLMLQNGVLRTNCIDCLDRTNFAQYAYGISALGHQLKAFGIIESSGIGVDDPLARDLMSTYEIMGDKLALQYGGSPAHNKIFCKIRDEWQPAIEYLDIIKTVQRFVSNAYKDSEKQNAIDV 1576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 59186520 59201415 - Bda019955.1 Bda04g00948 5970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00948 1576 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Bda04g00948 1576 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Bda04g00948 1576 Pfam SacI homology domain 332 651 IPR002013 GO:0016791
Bda04g00948 1576 Pfam SacI homology domain 1133 1317 IPR002013 GO:0016791
Bda04g00948 1576 Pfam SacI homology domain 1325 1396 IPR002013 GO:0016791
Bda04g00948 1576 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC2-LIKE ISOFORM X1 1324 1576 - -
Bda04g00948 1576 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC2-LIKE ISOFORM X1 264 1068 - -
Bda04g00948 1576 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC2-LIKE ISOFORM X1 1069 1325 - -
Bda04g00948 1576 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Bda04g00948 1576 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Bda04g00948 1576 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Bda04g00948 1576 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Bda04g00948 1576 MobiDBLite consensus disorder prediction 920 947 - -
Bda04g00948 1576 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 1324 1576 IPR043573 GO:0043813|GO:0046856
Bda04g00948 1576 MobiDBLite consensus disorder prediction 83 116 - -
Bda04g00948 1576 ProSiteProfiles Sac phosphatase domain profile. 396 812 IPR002013 GO:0016791
Bda04g00948 1576 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 264 1068 IPR043573 GO:0043813|GO:0046856
Bda04g00948 1576 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 1069 1325 IPR043573 GO:0043813|GO:0046856
Bda04g00948 1576 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Bda04g00948 1576 ProSiteProfiles Sac phosphatase domain profile. 1197 1529 IPR002013 GO:0016791
Bda04g00948 1576 CDD AP2 116 172 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00948 Bda10g00886 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00948 Bda-Chr4:59186520 Bda11g00083 Bda-Chr11:976054 1.41E-73 dispersed
Bda13g01423 Bda-Chr13:36931278 Bda04g00948 Bda-Chr4:59186520 3.21E-27 dispersed
Bda14g00518 Bda-Chr14:3751311 Bda04g00948 Bda-Chr4:59186520 2.35E-26 dispersed
Bda10g00886 Bda-Chr10:43324892 Bda04g00948 Bda-Chr4:59186520 0 wgd
Bda12g01046 Bda-Chr12:42253803 Bda04g00948 Bda-Chr4:59186520 4.67E-47 wgd
Bda04g00948 Bda-Chr4:59186520 Bda05g00621 Bda-Chr5:54273586 1.25E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15849 PF02383 Syja_N 1.00E-72 CL0031 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00948 K22913 - csv:101209934 1138.64