Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda04g00956 | ATGGAACCTATTGATCAGAAAGTGGACCTTGAATCCGACGAGGAGATCCCCTTGAACTCATCACCGACCAGGAAGAAGCTGTCTCCTTTTGATTTGGATACCACCCATTTGCGCTCCTGTGCAGATGTGATCAATTCATTGAATTCTAAGCCTATGCGGTTACGATCACTGAAGAGTATTTACTTTGTCTTGTTTAAAGCAAAAATCAACGCGTTGCTTCCTTTTGGTCCTCTGGCTATATTGCTCCATTATTTGACTGGGAAACATGGATGGGTCTTCTTCTTCACCTTAGTGGGCATCATACCTTTGGCGGAGCGACTTGGTTATGCAACCGAACAGCTCTCATCTTATACTGGACCTGCAGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATTGCTTTCTATGCATTAAAGAAAGGGATGATTAGGGTTGTTCAGCAATCTTTGTTGGGATCAATCTTGTCAAATATGCTTTTGGTGCTTGGTTGTGCCTTCTTCATTGGTGGAGTTCATTGCAAGAAGATCCAGGTTTTCAATAAGGCAGCTGCAATCGTGAACTCCGGATTGCTGTTGATGGCTGTCATGGGGATATTGCTTCCTGCCGTGCTTCATTTCACGCATACAGAGGTGCATTTTGGGGAGTCAGAATTAGCTCTGTCAAGATTTAGTAGCTTTGTCATGCTAATAGCATACGCCAGCTACCTTTTCTTTCAATTCAAAAGCCAACGTAATCACTATGGTCCAATTGAGGCGGAAAGAGAGAATGGTTCAAGTTCACATGAAGAGGAAGCTCCTGAGATAACTAGTTGGGAAGCAATTGGGTGGCTTGCTATTTTGACTGTCTGGGTATCTATCTTATCGGGATACTTCGTTGATGCCATCAAGGGCGCATCTGAGTCGTTAAACGTCCCAGTGTCTTTCATCAGTGTCATTTTGCTTCCACTTGTTGGAAATGCGGCAGAACACGCAAGCGCCATCATGTTTGCTGTTAAAGATAAGCTTGATATTAGCCTTGGAGTTGCAATCGGATCATCAACGCAAATATCAATGTTTGTTATTCCTTTCTGCGTGGTTGTCGGGTGGTTCATGGGCATTCCAATGGACTTAAATTTTCAACTTTTTGAGACTGCCACTCTGTTTATCGCAGTGATTGTAGTGGCGTTTATGCTACAGGAAGGTGCATCAAGCTATTTCAAGGGATTGATGCTTATCCTGTGCTATGTAATAGTAGGCGCCAGTTTTTTCTTCCACGTTGACTCTTCTAGCGGTGAGTAA | 1293 | 43.23 | MEPIDQKVDLESDEEIPLNSSPTRKKLSPFDLDTTHLRSCADVINSLNSKPMRLRSLKSIYFVLFKAKINALLPFGPLAILLHYLTGKHGWVFFFTLVGIIPLAERLGYATEQLSSYTGPAVGGLLNATFGNATELIIAFYALKKGMIRVVQQSLLGSILSNMLLVLGCAFFIGGVHCKKIQVFNKAAAIVNSGLLLMAVMGILLPAVLHFTHTEVHFGESELALSRFSSFVMLIAYASYLFFQFKSQRNHYGPIEAERENGSSSHEEEAPEITSWEAIGWLAILTVWVSILSGYFVDAIKGASESLNVPVSFISVILLPLVGNAAEHASAIMFAVKDKLDISLGVAIGSSTQISMFVIPFCVVVGWFMGIPMDLNFQLFETATLFIAVIVVAFMLQEGASSYFKGLMLILCYVIVGASFFFHVDSSSGE | 430 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 59242592 | 59245392 | - | Bda019963.1 | Bda04g00956 | 5978 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda04g00956 | 430 | TIGRFAM | caca2: calcium/proton exchanger | 63 | 421 | - | - | |
| Bda04g00956 | 430 | Pfam | Sodium/calcium exchanger protein | 91 | 245 | IPR004837 | GO:0016021|GO:0055085 | |
| Bda04g00956 | 430 | Pfam | Sodium/calcium exchanger protein | 279 | 416 | IPR004837 | GO:0016021|GO:0055085 | |
| Bda04g00956 | 430 | TIGRFAM | cax: calcium/proton exchanger | 72 | 421 | IPR004798 | GO:0006816|GO:0015369 | |
| Bda04g00956 | 430 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Bda04g00956 | 430 | Gene3D | - | 265 | 420 | IPR044880 | - | |
| Bda04g00956 | 430 | Gene3D | - | 120 | 256 | IPR044880 | - | |
| Bda04g00956 | 430 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER | 1 | 428 | - | - | |
| Bda04g00956 | 430 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 1 | 428 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
| Bda04g00956 | 430 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda04g00956 | Bda-Chr4:59242592 | Bda13g00559 | Bda-Chr13:6542330 | 0 | dispersed | |
| Bda04g00956 | Bda-Chr4:59242592 | Bda06g00458 | Bda-Chr6:6618326 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda04g00956 | K07300 | - | fve:101299212 | 650.203 |