Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00007 ATGATGTTGGATGTTAAGGAAAGGATAAATTATTCAATAAGTGAAGAAAATGGCTTTCCGGTGAAGGGTCAAAAATATCCGAGTTGGGTTGTGAACGGCGATCAGAAATTGTTGGCGTCTTCAACTGTGACAGCAAATCTGGTGGTGGCCAAAGACGGGTCTGGGAATTTCACGACTGTTCAGGCAGCAATAGAGGCGGCGGGAAAGAGAAGTGGGAGGGGAAGGTTTGTTATATATGTGAAGAGAGGTATTTATCGAGAAAATATTGAAGTTGGAGCCAATAATAATTACATTATGATGGTTGGAGGTGGGATGAAAAAGACAATAATTACAAGTGATAGAAGTGTTGGAAGAGGCTTTACAACCTACAATTCTGCCACTGCTGGAATTGATGGTCTGGGCTTCATAGCACGGGGGATTACATTCATTAATGGAGCCGGTCCAAAAATGGGTCAGGCGGTCGCTCTTCGATCAGCCTCCGATCTTGCAGTTTTCTACCGATGCGCCTTTTATGGGTATCAAGACACCCTTATGGTCCTCTCACAAAGGCAATTCTATAGAGAGTGTTACATCTACGGCACAATTGACTTCATTTTTGGCAATGCAGCTGTAGTCTTTCAACAATGCATCATCTATGTGAAAAAACCCTTAAATGGCCAAGTTAATGTGATCACGGCTCAAGGTCGAAAGGATCCGAATCAAAATACAGCAATTTCAATACATAAATCACAAATTCGAGCCGCCCCCGATCTTAAGCCAGTGGTTCATGCTTTCAGGACGTACTTAGGCCGACCATGGATGCGCTATTCTCGAACTGTTATTTTGAAAACTTACATTGATAATTTGGTGAGTCCTGTGGGGTGGTTGGCTTGGCAAAACAGTAATTTTGCTTTAAATACTTTGTATTATGGTGAGTATAATAACTTTGGCCCTAGGGCTTCAACCAAGTATAGGGTGAGATGGAGGGGCTTTCACGTAATTACAAGCCCACAAATTGCCTCCCGTTTTACCGTAGGTAGTCTCATTTCCGGCCAGTCGTGGTTGTCAACTACTGGAGTTCCATTCTCAGCTGGACTCTGA 1080 43.24 MMLDVKERINYSISEENGFPVKGQKYPSWVVNGDQKLLASSTVTANLVVAKDGSGNFTTVQAAIEAAGKRSGRGRFVIYVKRGIYRENIEVGANNNYIMMVGGGMKKTIITSDRSVGRGFTTYNSATAGIDGLGFIARGITFINGAGPKMGQAVALRSASDLAVFYRCAFYGYQDTLMVLSQRQFYRECYIYGTIDFIFGNAAVVFQQCIIYVKKPLNGQVNVITAQGRKDPNQNTAISIHKSQIRAAPDLKPVVHAFRTYLGRPWMRYSRTVILKTYIDNLVSPVGWLAWQNSNFALNTLYYGEYNNFGPRASTKYRVRWRGFHVITSPQIASRFTVGSLISGQSWLSTTGVPFSAGL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 516989 518259 - Bda020553.1 Bda05g00007 6319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00007 359 SUPERFAMILY Pectin lyase-like 40 358 IPR011050 -
Bda05g00007 359 PANTHER PECTINESTERASE 21 358 - -
Bda05g00007 359 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 21 358 - -
Bda05g00007 359 ProSitePatterns Pectinesterase signature 1. 72 91 IPR018040 -
Bda05g00007 359 Pfam Pectinesterase 46 344 IPR000070 GO:0030599|GO:0042545
Bda05g00007 359 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
Bda05g00007 359 Gene3D - 39 359 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00007 Bda-Chr5:516989 Bda15g00760 Bda-Chr15:11202090 2.36E-148 dispersed
Bda14g01633 Bda-Chr14:41840049 Bda05g00007 Bda-Chr5:516989 7.37E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00007 K01051 - qsu:112007203 511.531