Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00009 ATGGACGGGAAGGATCCTGTCAAAGCCTTGGCAGCTTTTCTCATTCGCTGCCATTCCTACCAGCTATCCTCCATTTCTCTCTCCCCCGACCCCAACCTCCATTATCCTCTCGTCGTTGAATTTGCGGAGCTTTTGGACTACGACCCTTCTCTTGCACGTCTTCTTTTCTCCCAACCCACCGATTTCTTGCGTTTCTTTGACGATGCTGCTCTTTGGGCTCATAAAATTGTCTCAAGTGAGTTACAAGGTGATCACGTGGCCATTAAAAAGAACTTCATTCATGTTCGCATCAATGTCAGCGGTTCTCCACTCGAGTTTCCTGAGACTTTTCCTAGCATTGGTTCCATAAGAGTGAGGCATCGTGGAATTCTTCTCACACTCAAAGGGACGGTAATCAGGTCTGGAGCAATCAAGATGTATGAAGGGGAGAGGTGGTATATGTGTCGGAAATGCAAGCACAAATTCCAAATTTATCCAGAACTAGAGAGTCGAAACTCCATACAATTACCATCTTTTTGCCCCTCTCAAAGGACTAGAAGTTGTGAAGGTAAAAGTTTTGAGTGCTTGGAGGGGTCTATAATACGTCATGATTACCAAGAGATGAAAATTCAGGAGAGTACACAGATACTGGGTGTTGGGTCCATACCTCGCTCAATCCCTGTCATTTTGAAGGATGACCTTGTTGACATTGTGAAAGCTGGAGATGATGTAATAGTTACTGGGGTCTTAAGTGCAAAGTGGTCTCCAGACCTTAAAGATGTACGGTGTGATCTTGATCCCATGTTAATTGCTAATTATGTGAGGAGAACAAATGAGTTGAAATCAGACATAGACATTCCTGAAGATGTTATAGCGAGATTCAAGCAGTTTTGGTCAAATTTCAATGATACTCCATTGAAAGGGAGAAATGCCATTTTAAGAGGTATATGCCCCCAAGTTTATGGACTCTTCACCGTAAAACTTGCCGTTATGTTGACTCTTATTGGTGGGGTGCAACAAATTGATGCATCTGGGACTAAAGTTCGAGGGGAATCTCATTTGCTTTTGGTTGGGGATCCAGGTACTGGAAAGTCACAGTTCTTGAAATTTGCAGCAAAATTAAGCAACCGATCTGTTATTACAACGGGATTAGGTAGTACTAGTGCTGGATTGACTGTTGCTGCTGTTAAGGATGGGGGTGAATGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGAGGACTTTGTTGCATTGACGAAGTGGACAGCATGAGAGAACATGACAGGGCCACCATACATGAAGCAATGGAGCAGCAGACCATAAGCGTTGCTAAGGCTGGTCTTGTAACAACTCTCAGAACTAGGACAATAGTATTTGGTGCAACAAATCCTAAAGGGCACTATGATCCTGATCAACCTTTATCTGTCAATACAACCCTCTCTGGTCCCTTGCTGAGCAGATTTGATATAGTCCTTGTCCTCCTAGACACCAAGAATGCTGAATGGGATGCAGTTGTTTCTTCGCACATTCTGTCTGAGGGTGAAGTAGAACAAGGGAAGTTTGAAGATCTATCAAAATCTTGGTCTTTGCCTATGATTCGCAGGTATATTCACTTTGTGAAAGGGTACTTCAGACCTGTGCTGACAAAGGAAGCAGAAAATATCATCTCAAACTATTATCAGCTCCAAAGAAGATCGGCAACACACAATGCAGCCAGGACAACCGTCCGAATGCTTGAAAGTTTGATCCGCCTAGCTCAAGCTCATGCCAGACTCATGTTTAGAAATGAAGTTACTCGATTAGATGCCATTACGGCTATATTATGCGTTGAATCATCCATGACTACCTCAGCTATTGTGGACAGTGTCGGGAATGCACTCCACTCCAATTTTACTGAGAATCCAGATGAGGAATATTCCAAGCAAGAAACACTGATCCTGGACAAGCTGGCGTCAGTTGATGCATTCTCAGATATCCATACTTCATGA 1971 43.58 MDGKDPVKALAAFLIRCHSYQLSSISLSPDPNLHYPLVVEFAELLDYDPSLARLLFSQPTDFLRFFDDAALWAHKIVSSELQGDHVAIKKNFIHVRINVSGSPLEFPETFPSIGSIRVRHRGILLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFQIYPELESRNSIQLPSFCPSQRTRSCEGKSFECLEGSIIRHDYQEMKIQESTQILGVGSIPRSIPVILKDDLVDIVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANYVRRTNELKSDIDIPEDVIARFKQFWSNFNDTPLKGRNAILRGICPQVYGLFTVKLAVMLTLIGGVQQIDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLRTRTIVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNAEWDAVVSSHILSEGEVEQGKFEDLSKSWSLPMIRRYIHFVKGYFRPVLTKEAENIISNYYQLQRRSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDSVGNALHSNFTENPDEEYSKQETLILDKLASVDAFSDIHTS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 616526 635855 + Bda020557.1 Bda05g00009 6321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00009 656 Pfam MCM AAA-lid domain 527 607 IPR041562 -
Bda05g00009 656 SMART mcm 109 609 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 Gene3D - 115 245 IPR012340 -
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 428 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 342 357 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 400 414 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 486 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 SUPERFAMILY Nucleic acid-binding proteins 34 252 IPR012340 -
Bda05g00009 656 SMART AAA_5 343 492 IPR003593 -
Bda05g00009 656 Gene3D - 276 613 IPR027417 -
Bda05g00009 656 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 34 646 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 Pfam MCM OB domain 115 245 IPR033762 -
Bda05g00009 656 Gene3D - 32 99 - -
Bda05g00009 656 Gene3D - 140 196 - -
Bda05g00009 656 PANTHER DNA HELICASE MCM9 34 646 - -
Bda05g00009 656 Pfam MCM P-loop domain 303 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 CDD MCM9 304 607 - -
Bda05g00009 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 612 IPR027417 -
Bda05g00009 656 ProSiteProfiles MCM family domain profile. 301 504 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00009 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4] - csv:101205171 1103.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00009 Bda-Chr5:616526 Bda09g00338 Bda-Chr9:4340736 8.26E-77 dispersed
Bda05g00009 Bda-Chr5:616526 Bda14g00572 Bda-Chr14:4347542 1.26E-65 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g01342 . 7 358 Core DNA Replication Machinery Family AT2G37560 67.6 8.8e-140 493.4
Bda04g00178 . 7 278 Core DNA Replication Machinery Family AT2G37560 54.2 8.3e-98 354.0
Bda01g01840 . 1 402 Core DNA Replication Machinery Family AT2G01120 61.3 6.6e-137 484.2
Bda08g00143 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.7 5.8e-181 630.9
Bda01g02162 . 1 264 Core DNA Replication Machinery Family AT1G26840 68.9 7.9e-94 340.5
Bda06g00243 . 1 795 Core DNA Replication Machinery Family AT1G79150 55.0 1.4e-223 773.1
Bda09g00338 . 1 955 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1360.1
Bda02g00085 . 1 500 Core DNA Replication Machinery Family AT5G46280 69.1 8.6e-217 750.0
Bda14g00572 BCT 6 734 Core DNA Replication Machinery Family AT2G16440 73.2 3.3e-313 1070.8
Bda09g00764 . 1 873 Core DNA Replication Machinery Family AT5G44635 68.5 0.0e+00 1135.2
Bda10g00656 . 1 585 Core DNA Replication Machinery Family AT4G02060 82.6 3.9e-283 970.7
Bda02g00849 . 1 399 Core DNA Replication Machinery Family AT2G29680 63.4 3.6e-142 501.9
Bda02g00849 . 1 369 Core DNA Replication Machinery Family AT1G07270 63.4 6.6e-130 461.1
Bda10g00488 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 8.9e-257 882.9
Bda10g00495 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.9 9.9e-256 879.4
Bda04g00428 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 8.6e-252 866.3
Bda05g01111 . 1 469 Core DNA Replication Machinery Family AT3G25100 77.6 1.8e-193 672.5
Bda03g01734 . 7 215 Core DNA Replication Machinery Family AT3G09660 79.4 8.7e-90 328.6
Bda05g00009 . 7 632 Core DNA Replication Machinery Family AT2G14050 76.7 3.3e-281 964.1
Bda08g00993 . 6 395 Core DNA Replication Machinery Family AT2G20980 54.0 8.9e-112 400.6
Bda10g00977 . 1 955 Core DNA Replication Machinery Family AT1G77320 50.5 3.9e-257 884.8
Bda04g00667 . 529 624 Core DNA Replication Machinery Family AT4G02110 74.0 1.0e-41 169.5
Bda12g00659 . 1 191 Core DNA Replication Machinery Family AT1G80190 68.6 9.9e-75 276.6
Bda06g00222 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bda09g00567 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda09g00575 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda08g00710 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 2.1e-58 221.9
Bda11g01457 . 1 145 Core DNA Replication Machinery Family AT3G12530 68.3 2.6e-56 214.9
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT1G19080 67.6 6.8e-70 260.4
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT3G55490 67.6 6.8e-70 260.4
Bda13g00221 . 15 164 Core DNA Replication Machinery Family AT5G49010 68.0 3.5e-53 204.9
Bda14g01239 . 1 1546 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1732.2
Bda14g01247 . 1 597 Core DNA Replication Machinery Family AT5G67100 66.3 3.1e-237 819.3
Bda10g00962 . 2 664 Core DNA Replication Machinery Family AT1G67630 53.0 2.0e-198 689.1
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda08g00470 . 1 418 Core DNA Replication Machinery Family AT5G41880 61.1 2.5e-163 572.0
Bda04g00382 . 27 1166 Core DNA Replication Machinery Family AT5G63960 77.1 0.0e+00 1753.4
Bda05g01086 . 4 440 Core DNA Replication Machinery Family AT2G42120 75.6 1.6e-199 692.2
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda02g00714 . 2 2110 Core DNA Replication Machinery Family AT1G08260 68.8 0.0e+00 2882.4
Bda02g00714 . 9 2217 Core DNA Replication Machinery Family AT2G27120 65.9 0.0e+00 2858.2
Bda06g00861 . 2 202 Core DNA Replication Machinery Family AT5G22110 77.6 1.5e-92 337.0
Bda09g01383 . 1 826 Core DNA Replication Machinery Family AT5G22010 62.4 8.5e-267 916.8
Bda08g00530 . 3 331 Core DNA Replication Machinery Family AT1G63160 89.7 1.2e-170 595.9
Bda11g00726 BCT 1 355 Core DNA Replication Machinery Family AT5G27740 85.1 7.1e-177 616.7
Bda03g00016 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 1.9e-152 535.4
Bda13g01478 BCT 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 3.1e-159 558.1
Bda01g01451 . 14 187 Core DNA Replication Machinery Family AT1G77470 51.6 5.5e-39 158.7
Bda11g01026 . 26 612 Core DNA Replication Machinery Family AT2G06510 68.8 2.2e-250 861.7
Bda06g00521 . 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.6e-243 838.2
Bda15g00624 . 1 626 Core DNA Replication Machinery Family AT5G08020 67.0 4.8e-242 833.9
Bda06g00521 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.5 8.5e-242 833.2
Bda15g00624 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.2 1.6e-240 828.9
Bda01g01616 . 1 361 Core DNA Replication Machinery Family AT5G26680 85.0 4.0e-179 624.4
Bda13g00449 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 1.6e-43 175.3
Bda13g00451 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 2.1e-43 174.9
Bda15g00131 . 1 299 Core DNA Replication Machinery Family AT2G25100 68.2 5.5e-116 414.1
Bda09g01436 . 46 765 Core DNA Replication Machinery Family AT1G08130 61.9 8.2e-258 886.7
Bda09g01436 . 223 765 Core DNA Replication Machinery Family AT1G49250 66.3 3.9e-205 711.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004183 1 3 1 3 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 0 3 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00009 Bda_Chr05 FPKM 28.796169 31.930729 7.02926 5.895022 71.538017 71.715744 69.765816 0.517204 0.275953