Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00009 ATGGACGGGAAGGATCCTGTCAAAGCCTTGGCAGCTTTTCTCATTCGCTGCCATTCCTACCAGCTATCCTCCATTTCTCTCTCCCCCGACCCCAACCTCCATTATCCTCTCGTCGTTGAATTTGCGGAGCTTTTGGACTACGACCCTTCTCTTGCACGTCTTCTTTTCTCCCAACCCACCGATTTCTTGCGTTTCTTTGACGATGCTGCTCTTTGGGCTCATAAAATTGTCTCAAGTGAGTTACAAGGTGATCACGTGGCCATTAAAAAGAACTTCATTCATGTTCGCATCAATGTCAGCGGTTCTCCACTCGAGTTTCCTGAGACTTTTCCTAGCATTGGTTCCATAAGAGTGAGGCATCGTGGAATTCTTCTCACACTCAAAGGGACGGTAATCAGGTCTGGAGCAATCAAGATGTATGAAGGGGAGAGGTGGTATATGTGTCGGAAATGCAAGCACAAATTCCAAATTTATCCAGAACTAGAGAGTCGAAACTCCATACAATTACCATCTTTTTGCCCCTCTCAAAGGACTAGAAGTTGTGAAGGTAAAAGTTTTGAGTGCTTGGAGGGGTCTATAATACGTCATGATTACCAAGAGATGAAAATTCAGGAGAGTACACAGATACTGGGTGTTGGGTCCATACCTCGCTCAATCCCTGTCATTTTGAAGGATGACCTTGTTGACATTGTGAAAGCTGGAGATGATGTAATAGTTACTGGGGTCTTAAGTGCAAAGTGGTCTCCAGACCTTAAAGATGTACGGTGTGATCTTGATCCCATGTTAATTGCTAATTATGTGAGGAGAACAAATGAGTTGAAATCAGACATAGACATTCCTGAAGATGTTATAGCGAGATTCAAGCAGTTTTGGTCAAATTTCAATGATACTCCATTGAAAGGGAGAAATGCCATTTTAAGAGGTATATGCCCCCAAGTTTATGGACTCTTCACCGTAAAACTTGCCGTTATGTTGACTCTTATTGGTGGGGTGCAACAAATTGATGCATCTGGGACTAAAGTTCGAGGGGAATCTCATTTGCTTTTGGTTGGGGATCCAGGTACTGGAAAGTCACAGTTCTTGAAATTTGCAGCAAAATTAAGCAACCGATCTGTTATTACAACGGGATTAGGTAGTACTAGTGCTGGATTGACTGTTGCTGCTGTTAAGGATGGGGGTGAATGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGAGGACTTTGTTGCATTGACGAAGTGGACAGCATGAGAGAACATGACAGGGCCACCATACATGAAGCAATGGAGCAGCAGACCATAAGCGTTGCTAAGGCTGGTCTTGTAACAACTCTCAGAACTAGGACAATAGTATTTGGTGCAACAAATCCTAAAGGGCACTATGATCCTGATCAACCTTTATCTGTCAATACAACCCTCTCTGGTCCCTTGCTGAGCAGATTTGATATAGTCCTTGTCCTCCTAGACACCAAGAATGCTGAATGGGATGCAGTTGTTTCTTCGCACATTCTGTCTGAGGGTGAAGTAGAACAAGGGAAGTTTGAAGATCTATCAAAATCTTGGTCTTTGCCTATGATTCGCAGGTATATTCACTTTGTGAAAGGGTACTTCAGACCTGTGCTGACAAAGGAAGCAGAAAATATCATCTCAAACTATTATCAGCTCCAAAGAAGATCGGCAACACACAATGCAGCCAGGACAACCGTCCGAATGCTTGAAAGTTTGATCCGCCTAGCTCAAGCTCATGCCAGACTCATGTTTAGAAATGAAGTTACTCGATTAGATGCCATTACGGCTATATTATGCGTTGAATCATCCATGACTACCTCAGCTATTGTGGACAGTGTCGGGAATGCACTCCACTCCAATTTTACTGAGAATCCAGATGAGGAATATTCCAAGCAAGAAACACTGATCCTGGACAAGCTGGCGTCAGTTGATGCATTCTCAGATATCCATACTTCATGA 1971 43.58 MDGKDPVKALAAFLIRCHSYQLSSISLSPDPNLHYPLVVEFAELLDYDPSLARLLFSQPTDFLRFFDDAALWAHKIVSSELQGDHVAIKKNFIHVRINVSGSPLEFPETFPSIGSIRVRHRGILLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFQIYPELESRNSIQLPSFCPSQRTRSCEGKSFECLEGSIIRHDYQEMKIQESTQILGVGSIPRSIPVILKDDLVDIVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANYVRRTNELKSDIDIPEDVIARFKQFWSNFNDTPLKGRNAILRGICPQVYGLFTVKLAVMLTLIGGVQQIDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLRTRTIVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNAEWDAVVSSHILSEGEVEQGKFEDLSKSWSLPMIRRYIHFVKGYFRPVLTKEAENIISNYYQLQRRSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDSVGNALHSNFTENPDEEYSKQETLILDKLASVDAFSDIHTS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 616526 635855 + Bda020557.1 Bda05g00009 6321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00009 656 Pfam MCM AAA-lid domain 527 607 IPR041562 -
Bda05g00009 656 SMART mcm 109 609 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 Gene3D - 115 245 IPR012340 -
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 428 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 342 357 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 400 414 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 486 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 SUPERFAMILY Nucleic acid-binding proteins 34 252 IPR012340 -
Bda05g00009 656 SMART AAA_5 343 492 IPR003593 -
Bda05g00009 656 Gene3D - 276 613 IPR027417 -
Bda05g00009 656 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 34 646 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 Pfam MCM OB domain 115 245 IPR033762 -
Bda05g00009 656 Gene3D - 32 99 - -
Bda05g00009 656 Gene3D - 140 196 - -
Bda05g00009 656 PANTHER DNA HELICASE MCM9 34 646 - -
Bda05g00009 656 Pfam MCM P-loop domain 303 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda05g00009 656 CDD MCM9 304 607 - -
Bda05g00009 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 612 IPR027417 -
Bda05g00009 656 ProSiteProfiles MCM family domain profile. 301 504 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00009 Bda-Chr5:616526 Bda09g00338 Bda-Chr9:4340736 8.26E-77 dispersed
Bda05g00009 Bda-Chr5:616526 Bda14g00572 Bda-Chr14:4347542 1.26E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00009 K10738 - csv:101205171 1103.97