Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00016 ATGGCGATTAAGGCCTCTTTCAGCAACTTAGCAAACGTGTTGCTAGACTGGAATGATGCTCAGGATAGTGATTTTTGTGCATGGCGGGGAGTTCTTTGCGATAATATCAGTCTCTCGGTTGCGTCTTTAAATCTTTCCAACTTGAACCTGGGTGGGGAAATGTCAGCAGCCATTGGAGATTTGAGAAATTTACAGTCCATTGATCTTCAGGGTAATAAACTGACAGGACAAATTCCCGATGAGATTGGAAATTGCGGATTTCTTGTCCATCTCGATTTATCTGATAATCTGCTCTATGGAGACATACCATTTTCAATATCCAAGCTGAAGCAACTTGAGTTTCTAAATTTGAAGAACAATCAGTTGAGTGGGCCTATTCCTTCAACCCTTACCCAAATTCCAAACTTGAAGACTCTCGACCTTGCTCGGAACCAGCTGACTGGTGAGATTCCCAGATTAATATATTGGAATGAAGTTCTACAATACCTTGGTTTACGAGGCAATTATTTGACGGGAATGTTATCCCCCGATATGTGCCAACTTACAGGCTTGTGGTACTTTGATGTACGTAGCAATAACCTTACTGGCACCATACCAGACAGCATTGGGAACTGCACTAGTTTTGAAATTTTGGATATTTCTTACAACCAGATATCTGGGGTGATTCCTTACAACATCGGTTTTTTACAAGTCGCTACCCTATCCCTCCAAGGAAATAGATTGACTGGGGAGATACCTGAGGTGATTGGTTTGATGCAGGCTCTTGCTGTCCTGGATTTGAGTGAGAATGAGCTAGAAGGGCCTATACCACCAATTCTTGGCAATTTGTCTTATACTGGCAAACTATACCTCCATGGAAACAAGCTGAGTGGTCCAATTCCTCCTGAGCTGGGCAATATGTCTAAACTAAGCTACTTGCAATTAAATGACAATCAACTGGTTGGGAAAATTCCAGCTGAGCTTGGCAAACTTGATCAATTGTTTGAATTGAACTTAGCCAATAATTACCTTGATGGTCCGATACCACATAATATAAGCTCCTGCACGGCTTTGAATCAATTCAATGTTCATGGTAATCGCCTCAGTGGACCTATCCCTTCCGGGTTTCAGAATCTAGAAAGCTTAACATACTTAAATCTTTCAGCAAACAATTTCCAGGGAAGGATACCAGTTGAGCTAGGACGCATAATAAATCTTGACACACTGGATCTTTCGAGCAACAATTTTACTGGCCACATACCAGCTTCTGTTGGTGATTTAGAGCATCTTCTTACCTTAAATTTGAGTAAAAATCTTCTTGGAGGGGCATTGCCTGCAGAATTCGGAAATCTCAGAAGTATACAAATCATTGATATGTCGTATAATATTCTCTCTGGAAGAATTCCTTCAGAATTTGGTCAGTTACAGAATCTTATGCAACTGATTCTGAATGATAACAGCTTCGAAGGAAAAATTCCAGATCAGCTGACAAACTGCTTCAGCCTTGTTGTTTTGAATGTGTCTTTCAACAATTTATCTGGAGTCATTCCTCCGATGAACAACTTCTCGAGATTTTCTCCGTTTGTCGGAAATCCTATGTTATGTGGCAATTGGGTGGGTTCAAGCTGTGGTCCTTATTATCCAAAATCTAGAGCAATATTCTCTCGAACTGCAGTTGTGTGTATGACAATCGGCTTCATCGTGCTCCTGGTGATTGTGATTGTTGCAGTTTACAAATCCAACCAACCGAACCATTTTATGAAGAGTCCTCCTAAGCTTGTAGTTCTTCAGATGGACATGGCAATTCACACCTATGATGATATAATGAGAGTCACGGAGAATCTGAGTGAGAAGTACATTATCGGATATGGAGCCTCGAGTACAGTGTATAAATGCGTATTGAAGAATTGTCATCCTATTGCAATTAAGCGACTCTACAATCAGTATCAGCACAATTTGCGAGAGTTTGAGACCGAGCTCGAAACAGTCGGGAGTATCAGGCACAGAAACCTTGTTAGCTTGCATGGTTATTCCCTATCTCCCTTTGGAAATCTTCTGTTCTACGACTACATGGAAAATGGATCTTTATGGGACCTTCTTCATGGACCATCGAAGAAGGTAAAACTGGATTGGGAAGCGCGGTTGAAGATAGCCGTGGGAGCTGCACAAGGACTTGCTTATCTTCATCATGATTGCAACCCTCGGATAATTCACCGAGATATTAAATCCTCAAATATCTTGGTGGACGAGAATTTTGATGCCCATCTTTCCGATTTTGGAATTGCCAAATCCATCCCCACTGCAAAAACTCATGCCTCGACTTATGTACTTGGGACAATTGGTTATATCGACCCGGAATACGCTCGAACGTCTCGACTCAATGAAAAATCTGACGTCTACAGCTTTGGAATCGTACTTCTCGAGCTACTTACTGGAAAAAAAGCAGTGGACAATGAATCTAACTTGCATCAAGTGATAATGTCTAAGGCGGATAATAATACTGTCATGGAGGCAGTTGATCCTGAGGTTTCTGTCACTTGCATGGATTTATCTCATGTTAGAAAGACCTTTCAACTTGCCCTTCTATGCACGAAGAGGGCCCCATCGGAGAGACCAACAATGCACGAGGTGGCGAGGGTTCTGGTTTCGCTTCTTCCGGCTCCACCGGCGAAAATGATAGATTATGCAAAATCTGTGATAGTCAAGGGACAACAACAGATGAGATTCCCGCCACCGCTGTTTGAACCGGAGAAGAGCTCCTCCGATGCACAATGGTTTGTTCGATTTGGTGAAGTTATCTCAAAAAACGCCCTTTGA 2796 42.06 MAIKASFSNLANVLLDWNDAQDSDFCAWRGVLCDNISLSVASLNLSNLNLGGEMSAAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGFLVHLDLSDNLLYGDIPFSISKLKQLEFLNLKNNQLSGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNYLTGMLSPDMCQLTGLWYFDVRSNNLTGTIPDSIGNCTSFEILDISYNQISGVIPYNIGFLQVATLSLQGNRLTGEIPEVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLSGPIPPELGNMSKLSYLQLNDNQLVGKIPAELGKLDQLFELNLANNYLDGPIPHNISSCTALNQFNVHGNRLSGPIPSGFQNLESLTYLNLSANNFQGRIPVELGRIINLDTLDLSSNNFTGHIPASVGDLEHLLTLNLSKNLLGGALPAEFGNLRSIQIIDMSYNILSGRIPSEFGQLQNLMQLILNDNSFEGKIPDQLTNCFSLVVLNVSFNNLSGVIPPMNNFSRFSPFVGNPMLCGNWVGSSCGPYYPKSRAIFSRTAVVCMTIGFIVLLVIVIVAVYKSNQPNHFMKSPPKLVVLQMDMAIHTYDDIMRVTENLSEKYIIGYGASSTVYKCVLKNCHPIAIKRLYNQYQHNLREFETELETVGSIRHRNLVSLHGYSLSPFGNLLFYDYMENGSLWDLLHGPSKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDIKSSNILVDENFDAHLSDFGIAKSIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQVIMSKADNNTVMEAVDPEVSVTCMDLSHVRKTFQLALLCTKRAPSERPTMHEVARVLVSLLPAPPAKMIDYAKSVIVKGQQQMRFPPPLFEPEKSSSDAQWFVRFGEVISKNAL 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1222436 1227567 - Bda020575.1 Bda05g00016 6328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00016 931 Pfam Leucine Rich repeat 204 220 IPR001611 GO:0005515
Bda05g00016 931 SUPERFAMILY Protein kinase-like (PK-like) 587 874 IPR011009 -
Bda05g00016 931 ProSiteProfiles Protein kinase domain profile. 608 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00016 931 Gene3D Phosphorylase Kinase; domain 1 571 683 - -
Bda05g00016 931 Gene3D Ribonuclease Inhibitor 1 157 IPR032675 -
Bda05g00016 931 Gene3D Ribonuclease Inhibitor 231 540 IPR032675 -
Bda05g00016 931 Pfam Leucine Rich Repeat 63 85 IPR001611 GO:0005515
Bda05g00016 931 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 896 - -
Bda05g00016 931 SMART LRR_typ_2 300 324 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 420 443 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 133 157 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 252 276 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 468 492 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 372 396 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 181 205 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 109 132 IPR003591 -
Bda05g00016 931 SMART LRR_typ_2 61 85 IPR003591 -
Bda05g00016 931 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 1 896 - -
Bda05g00016 931 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Bda05g00016 931 SUPERFAMILY L domain-like 14 229 - -
Bda05g00016 931 SUPERFAMILY RNI-like 174 510 - -
Bda05g00016 931 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Bda05g00016 931 SMART serkin_6 608 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00016 931 Pfam Protein kinase domain 611 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00016 931 Gene3D Transferase(Phosphotransferase) domain 1 684 889 - -
Bda05g00016 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Bda05g00016 931 Gene3D Ribonuclease Inhibitor 158 230 IPR032675 -
Bda05g00016 931 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Bda05g00016 931 Pfam Leucine rich repeat 398 455 IPR001611 GO:0005515
Bda05g00016 931 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00642 Bda-Chr1:33452813 Bda05g00016 Bda-Chr5:1222436 0 dispersed
Bda05g00016 Bda-Chr5:1222436 Bda11g00657 Bda-Chr11:6504448 1.24E-64 dispersed
Bda05g00774 Bda-Chr5:56198663 Bda05g00016 Bda-Chr5:1222436 1.38E-07 dispersed
Bda07g01320 Bda-Chr7:16013117 Bda05g00016 Bda-Chr5:1222436 4.93E-17 dispersed
Bda05g00016 Bda-Chr5:1222436 Bda03g00124 Bda-Chr3:1080363 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69610 PF00069 Pkinase 8.10E-43 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00016 K20718 - vvi:100256609 1570.44