Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00042 ATGGTGAGAGGGAAAATCCAGATGAAGAGAATCGAAGATGCGACGAGTCGGCAAGTGACTTTCAGTAAACGACGAAACGGGCTGTTGAAGAAGGCCTATGAACTCTCTGTTCTCTGCGATGCTGAGGTTGCTCTAATCATTTTGTCTCAGAAAGGACGGATTTTTGAGTTTTCAAGCTCTGACATGCAAAAAACTGTCGAACGATACCGAAAATATCAACAAAATGGACTAAGTCAGAAGATTGACGTGGAGCAACGCATTCAGCAACTAAAACATGAAACCGCAACCATGGCAAAGAAGATTGAGCTTCTTGAAGCTTCTCAAAGGTTGCTTATGGGAACTGGTTTAGGTTCATGTTCCTTCGAGGAACTCGGAGAGATTGGCAACCAACTCGAGCAGAGTTTACACCGTATAAGAGCTCGAAAGGTATGTCTCGACCCAAACCGAGCACTAGGGTAA 459 44.44 MVRGKIQMKRIEDATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIILSQKGRIFEFSSSDMQKTVERYRKYQQNGLSQKIDVEQRIQQLKHETATMAKKIELLEASQRLLMGTGLGSCSFEELGEIGNQLEQSLHRIRARKVCLDPNRALG 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2762199 2766113 - Bda020625.1 Bda05g00042 6354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00042 152 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bda05g00042 152 Pfam K-box region 86 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda05g00042 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda05g00042 152 PANTHER MADS BOX PROTEIN 1 143 - -
Bda05g00042 152 ProSiteProfiles K-box domain profile. 87 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda05g00042 152 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Bda05g00042 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda05g00042 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda05g00042 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda05g00042 152 Coils Coil 87 107 - -
Bda05g00042 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda05g00042 152 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Bda05g00042 152 PANTHER MADS-BOX PROTEIN SOC1 1 143 - -
Bda05g00042 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda05g00042 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00042 Bda06g00660 CCT
Bda05g00042 Bda15g00745 CCT
Bda05g00042 Bda06g00660 ECH
Bda05g00042 Bda15g00745 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00042 Bda-Chr5:2762199 Bda15g00745 Bda-Chr15:10917908 5.44E-62 dispersed
Bda05g00042 Bda-Chr5:2762199 Bda06g00660 Bda-Chr6:9234513 4.32E-53 wgd
Bda05g00042 Bda-Chr5:2762199 Bda07g01843 Bda-Chr7:35769626 5.66E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15857 PF01486 K-box 8.30E-16 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00042 - - fve:101305891 196.823